Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06086 ATGTTAGGGGAAGAGGGTAACGACCGCGCCGCCGGTCACCGGAGGACATATTCACGTTCAGTTTCATGGACTGACCGGTCTCCGGCTACCCGGAAGCCTCCACCGGCGGCGAATAACAAGCCAAGACCGTTGCTGCCACCCCTTCAGCCTCTTTCCATCAACAAACGTAGCGTTGAGGAGTGGCCTAGTGCTGGATCTGATGATCTTGGAGTTTGGCCACTTGCACAGACTCCAAGAGGGTCCATCACAGATTCGGGTCGACCCGGGAAGGAGTTTCAGCTGAAGAAGGACAAATTGGCCTTCTATGACAAGGAGTGTTCGAGAATTGCAGAGCATGTGTACCTGGGAAGTGACACGGTGGCGAAGAACCATGAGCTTCTGAGGCAGAAAGGGATCACTCATGTGCTCAACTGTGTTGGGTTTGTTTGTCCTGAGTATTTCAAGAGTGATTTTGTGTATAAGACACTTTGGTTGCAGGATAGTCCTTCAGAGGACATCACTAGTATTCTCTATGATGTGTTTGATTACTTTGAGGATGTTAGACAGCAAGGTGGGCGTGTCCTTGTCCATTGTTGTCAAGGGGTTTCTAGATCAACCTCTTTGGTGATTGCTTATCTCATGTGGAGGGAAGGACAGAGTTTTGAAGATGCTTTTCAGTATGTGAAGAATGCAAGGGGTGTTACTAATCCAAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAAAGGGTACATGCTATGCCTGCTAGTCCAAATTCTATTCTTAGGATGTATAGGATGGCTCCTCATTCTCCTTATGACCCTCTTCATTTGGTCCCCAAAATGGTTAACCAGCCTTGTGCTAAAGCACTTGATTCTCGTGGGGCGTTTATTATCCATGTTCCTTCTGCTATATATGTATGGATTGGGAAAATTTGTAGTTCTGTCATGGGTTGTAATGCAAGGTCAGCAGCCATTCAGGTCATCCGTTATGAGAAGGCAACGGGTCCAATTCTTAGCATCCATGAAGATGAAGAGCCACTGGAGTTTTGGGTTGCTCTTTCCAACCAGCAATTGTTATCAGGTAATTGTAAGAAAGGAGAGGTCAAGAAGGATATGGTGTTGCCTTCTGAGGAAAGAATGGAGATTGATGATATTGATGTTTCAGTTGATATGGGAATTGGTCCAAGGAAAGTTGATGAATATGATTTGGATTTTGGGATTTTCCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTTCTGTATCTAATACTGGATCAGAAACTTGCCTTCCTGCTAGAGAAAATGGTTGGGGAAGACTGAGGAGGAAGCTTGCTTGTGGAATCATGAAAGGTTTTTTCACATCCTCCAAATGCTGTGATACAACCTTATCCAAAGATGAATCAAGTGTGAACATGGAAGAAGAAAATCAACATTCTGTAGTTGTTCATCCTTTGCCACCATCATCAAACTCTCTTTATGTTGCAAAGCATAATCTTGAAGTCATGGATCACTTTGTTCCTTGTGTTGATTCATCATTGCCACCAACTCCTCATCGAACATCAGATTCTTTTCCATGTTTTCTAGGTGGTAGCCCAAAATTCAGTTCCAAGTCACCAACACTTTCTCCCTCCAGTTCTGACTATGCCAGTTCCTTCACATTTTCACCTTCTTCAACAAATTGGTCTGATTTGTCACTCATGTCCTCTCGGCAGCCATCACCTTCTGGCCTGGAATCAGCTGAACCCTTTTATTTTAAAGATGCATCTTTCTCAGAAAGAGAAAGATCCCCTTCACCTCACAAAGAAGCTGTCACCTCATCTTCAGAGGCATTTTTGGCTAATGACACATTGGTAGGGACAAACTCTTATTTTCCATGCAAAGGATCATACCCCTCCATTGCAGAGCGCAGAGGGAGTAACCCACCACCTCTCATGTTGCTACCCTCAGTCAGTGAATCATCCCACACTCACAAGATCACGGTAAGATCACAGTCATTCACTTTGCCTGACTTAGATGATAATTTGATGAAGGATGTTAGTTGTAAGAAATCTGATCGTGAACACAGTGGAAAATGGCTAATATCAGATGCAGATATCATCATTACACCTGTTGAAAGTGAGATTAATGGCGGATGA 2124 0.4421 MLGEEGNDRAAGHRRTYSRSVSWTDRSPATRKPPPAANNKPRPLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLAQTPRGSITDSGRPGKEFQLKKDKLAFYDKECSRIAEHVYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPSEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPCAKALDSRGAFIIHVPSAIYVWIGKICSSVMGCNARSAAIQVIRYEKATGPILSIHEDEEPLEFWVALSNQQLLSGNCKKGEVKKDMVLPSEERMEIDDIDVSVDMGIGPRKVDEYDLDFGIFHKALAGGVVPPFSVSNTGSETCLPARENGWGRLRRKLACGIMKGFFTSSKCCDTTLSKDESSVNMEEENQHSVVVHPLPPSSNSLYVAKHNLEVMDHFVPCVDSSLPPTPHRTSDSFPCFLGGSPKFSSKSPTLSPSSSDYASSFTFSPSSTNWSDLSLMSSRQPSPSGLESAEPFYFKDASFSERERSPSPHKEAVTSSSEAFLANDTLVGTNSYFPCKGSYPSIAERRGSNPPPLMLLPSVSESSHTHKITVRSQSFTLPDLDDNLMKDVSCKKSDREHSGKWLISDADIIITPVESEINGG. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06086 707 MobiDBLite consensus disorder prediction 1 15 - -
Seca12g06086 707 Pfam Dual specificity phosphatase, catalytic domain 113 243 IPR000340 GO:0008138|GO:0016311
Seca12g06086 707 ProSiteProfiles Dual specificity protein phosphatase domain profile. 105 247 IPR020422 GO:0006470|GO:0008138
Seca12g06086 707 ProSitePatterns Tyrosine specific protein phosphatases active site. 189 199 IPR016130 GO:0016311|GO:0016791
Seca12g06086 707 Gene3D Protein tyrosine phosphatase superfamily 88 247 IPR029021 -
Seca12g06086 707 Gene3D Severin 257 354 IPR029006 -
Seca12g06086 707 MobiDBLite consensus disorder prediction 34 48 - -
Seca12g06086 707 MobiDBLite consensus disorder prediction 1 51 - -
Seca12g06086 707 SMART dsp_5 105 244 IPR020422 GO:0006470|GO:0008138
Seca12g06086 707 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 100 247 IPR029021 -
Seca12g06086 707 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 164 225 IPR000387 GO:0016311|GO:0016791
Seca12g06086 707 PANTHER MKPA PROTEIN 10 654 - -
Seca12g06086 707 SUPERFAMILY Actin depolymerizing proteins 251 354 - -
Seca12g06086 707 CDD DSP 106 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06086 Seca-Chr12 152724712 152726835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06086 1 141 Protein tyrosine phosphatase (PTP) family AT3G55270 38.947 1.75e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06086 - - tpra:123917031 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06086 12 152724712 152726835 Seca12g06086 12 152724712 152726835 ECH
Seca12g06086 12 152724712 152726835 Seca6g01835 6 74984839 74987073 PCT