Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06075 ATGAAAAACTTAGACCCCACGGCGGAGGAGTTCAGGCCTCGAAACCCTAACCATGGAGCCCCAACGACACCGTTTCCTCACCCTTACGCTTTCCCCTACGGAGCATTCGAAACGGTATCGTTTTACTATGGCGAAGCTGTCGTTCCTGTTCCGTATCCACACACGCAGTTATCCTCTCCACCGGCACTGGTTGCTCCTTCGCCGGCTTCGCCGCCGACGCCGCTGTCCACGTCATCAACACGTTCACTGCTGCTGAGCGTCGTGCCTTCAGAGACGGTGATTTCTGAATCCACGTTGAGGAGGGAATTGGAGGTGTTCGGGGATGTGAGAGGGATTCAGATGGAAAACTTACGAGAAGGAACCGTTACCGTTCACTTCTATGACCTGAGACATGCGGAAACGGCGTTAACAGCGATTCGATGGCAGCAGCACCACACAAGGCTTCGCAACCACCACTACGCACCGTTCAACAGCACCACACGCATACCAGCGCGTGGTCTCATTGCCGTGTGGGCCCAGTACATCCTCCCGGCGCGTGATGGTGTTCCTGATGGGCAAAACCAAGGGACTATCGTGGTTTTCAATTTGGATTCGGAAATGGACGCAGAGAGTATCCGAGAAATCTTTGAGGCTTTTGGACCCGTAAAGGAAATCAGACATACCCCATCCAAAAAGAACCAAAGATTCGTGGAGTTTTTTGACATTAGAGACGCAGCAAAGGCTTTGAAGCAAATGAATGGTAAAGAAATTCATGGAAAACCAGTTGTTGTTGAATTCAGTAGACCAGGAGGTCATGGCAGGAAGTTTTTCAATGTGGCTGCTGCTTCCTCTACAATTTCCAAGTCCAAATCACTTCCCTATTCTCCTTCTCCTCCACCATTGCCGCGAAGATTCTGGCCTAGTTTTGTTCCTGATGCTGCTGCTTCACATTTTTCTCAACGACAATTATCTTCCTCCAAGAAGACTTTAACCATTTCCATGAATTTGGGTGAGGAAATTCGGAATGGGGATGAAGATGAGAGGCATCATTCTCATTCTCATTCCCATGTGCCTGCTCCCAAGAGAAATTCCGTTAGAAAACACGTCAGCGAGTCCACGGTGGAAAGCACGAAGCACCAACAACAACCAGTGCCTAGAAGTAGGAATTGGAGGGGAAAGCAAGCAAAGAAGCATGAAACTCGGTTTCTGATTAAAGAAGATGCTGCTACGGCCGAGTCTGGTTGCATAGATTCCAGAACTACTGTGATGATCAAGAACATACCCAACAAGTACAGCCAGAAGCTGCTATTGAACATGTTGGACAACCACTGCATTCACTGCAACGAGCAAATTGGCGATGGTGATGACCAGATTTTGTCATCCTATGATTTTGTGTACCTTCCCATTGATTTCAACAACAAGTGCAATGTGGGATATGGGTTTGTGAACATGACAACTCCGGAGGCAACCCTGAGGCTCTATAAGGCTTTCCATCTCCAACCATGGGAGGTGTTCAATTCAAGAAAAATTTGTGAGGTCACCTATGCTAGAGTCCAGGGATTGGAAGCGTTGAAAGAGCACTTCAAGAACTCGAAGTTCCCATACGAGATGGAGCAGTACCTGCCAGTGGTGTTTTCACCGCCTCGAGACGGGAAGCAGCTCACGGAGCCACTTCCAATTGGTAACAACAAATCCATCTCTATGACTATCCCCATTGGTCTTGGGGCTTCTGACGACTTGCTTAGCAGTAGCAGTAACCGCCAAAACGGCAGCGTTGAAGAAGGTGATGATGATCATCATGTGGATGGAGTGAGTGAGTAA 1800 0.4856 MKNLDPTAEEFRPRNPNHGAPTTPFPHPYAFPYGAFETVSFYYGEAVVPVPYPHTQLSSPPALVAPSPASPPTPLSTSSTRSLLLSVVPSETVISESTLRRELEVFGDVRGIQMENLREGTVTVHFYDLRHAETALTAIRWQQHHTRLRNHHYAPFNSTTRIPARGLIAVWAQYILPARDGVPDGQNQGTIVVFNLDSEMDAESIREIFEAFGPVKEIRHTPSKKNQRFVEFFDIRDAAKALKQMNGKEIHGKPVVVEFSRPGGHGRKFFNVAAASSTISKSKSLPYSPSPPPLPRRFWPSFVPDAAASHFSQRQLSSSKKTLTISMNLGEEIRNGDEDERHHSHSHSHVPAPKRNSVRKHVSESTVESTKHQQQPVPRSRNWRGKQAKKHETRFLIKEDAATAESGCIDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDGDDQILSSYDFVYLPIDFNNKCNVGYGFVNMTTPEATLRLYKAFHLQPWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPYEMEQYLPVVFSPPRDGKQLTEPLPIGNNKSISMTIPIGLGASDDLLSSSSNRQNGSVEEGDDDHHVDGVSE. 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06075 599 SMART rrm1_1 190 258 IPR000504 GO:0003723
Seca12g06075 599 SMART rrm1_1 82 149 IPR000504 GO:0003723
Seca12g06075 599 FunFam Protein MEI2-like 1 188 283 - -
Seca12g06075 599 CDD RRM3_EAR1_like 412 513 IPR034458 -
Seca12g06075 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 262 IPR000504 GO:0003723
Seca12g06075 599 MobiDBLite consensus disorder prediction 572 599 - -
Seca12g06075 599 SUPERFAMILY RNA-binding domain, RBD 189 491 IPR035979 GO:0003676
Seca12g06075 599 Gene3D - 181 277 IPR012677 -
Seca12g06075 599 MobiDBLite consensus disorder prediction 584 599 - -
Seca12g06075 599 PANTHER RNA RECOGNITION MOTIF-CONTAINING 339 539 - -
Seca12g06075 599 FunFam Terminal EAR1-like 1 358 518 - -
Seca12g06075 599 Pfam RNA recognition motif 2 412 522 IPR007201 -
Seca12g06075 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 255 IPR000504 GO:0003723
Seca12g06075 599 MobiDBLite consensus disorder prediction 1 23 - -
Seca12g06075 599 MobiDBLite consensus disorder prediction 336 388 - -
Seca12g06075 599 Gene3D - 328 526 IPR012677 -
Seca12g06075 599 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06075 Seca-Chr12 152619143 152622486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06075 184 261 Eukaryotic Initiation Factors Gene Family AT2G23350 35.366 1.68e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06075 - - lja:Lj4g3v2717080.1 638.647