Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06065 ATGTTAGAGAGTGGTTGTGGTGGTGGTGCACGTGATTCTGAGGCGAGTTTGGAGACGGTGAATTCAATCACACAGCGAAGTTCGATGAGCAGCGAAAGCATTTGCAGCACGAGTTTCAGCCGTCTTTCCTTCGACCTCCTCCCCGCTTCACCGGAGAGTCTCTCCGTCAAGCCTCACCGTTCCTCTGACTTCGCTTACTCCGCCATCCGCTCCGCCACCTTCCGCCGCAAATCCGCCCTCACCTTCCGCGACTTCCACCTCCTCCGCCGCATCGGCGCCGGCGACATCGGAACCGTCTACCTCTGCCGCCTCCGCAACAACGCCAACGAGCAATTCGACAAGGAAGAAGAAGACACGTCGTGCTTGTACGCCATGAAGGTAGTGGACAAAGACGCAGTGGCATTGAAGAAGAAAGCGCAGAGAGCCGAAATGGAGAGAAAGATCCTTAAGATGCTGGATCATCCCTTCCTTCCTACACTCTACGCTGAGTTCGAGGCCTCTCATTTCTCTTGCATTGTCATGGAGTTTTGTTCCGGTGGAGACTTGCATTCGCTACGCCACAAGCTCCCGCACAACCGTTTTCCTCTCTCTTCCGCAAGATTTTATGCGGCTGAGGTACTGGTGGCGTTGGAGTACCTTCACATGCTGGGAATCATTTACAGGGATCTAAAGCCTGAGAACGTCTTGGTCAGATCAGACGGTCACATCATGCTTTCTGATTTCGATCTTTCTCTTTGCTCTGATGCAATCCCGGCCGTTGAATCTTCAGATTGCTTACACGATCCCGCGATTCCATCTGCATTACCCTACACTCGCACGCGTTCTTTTACTACTCCCTTCTCGTGCTTTTCCAACCGGTTGTTCCGGTCCCGCAAAGTCCAGACCCTTCTACCGAACCGGCTCTTCGTGGCTGAACCGGTTGCTGCCAGATCATGTTCTTTTGTCGGAACACACGAGTACGTCTCACCGGAGGTCGCCTCCGGTCACTCCCATGGCAACGCCGTCGATTGGTGGTCCTTTGGGATATTCATCTATGAGCTAATCTACGGCCGTACGCCGTTTGCGGCCTCATCGAACGAGGCTACGCTGCGGAACATATTGAAGAAGCCCCTGACCTTTCCGACGGCGACGCCGTCGAGCACGCTTGAGGTACACGCGCAGGACTTGATATCCGGCTTGCTGAACAAGGAGCCGTCGCAGCGGCTCGGGTCGAAGCGCGGCGCTGCTGACGTCAAGAAGCACCCGTTCTTCAAAGAGCTCAACTTGGCGCTGATTCGCATGCTGAGGCCGCCCGAAGTGCCGGGCTCGAGAAGGCAGAAAACGACGTCGTTGCACCATGTGAAGGGTAGAAGCAAGCAGCAACCGACGGCGTCGTTTGATTGTTACTTTTGA 1392 0.5496 MLESGCGGGARDSEASLETVNSITQRSSMSSESICSTSFSRLSFDLLPASPESLSVKPHRSSDFAYSAIRSATFRRKSALTFRDFHLLRRIGAGDIGTVYLCRLRNNANEQFDKEEEDTSCLYAMKVVDKDAVALKKKAQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKLPHNRFPLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESSDCLHDPAIPSALPYTRTRSFTTPFSCFSNRLFRSRKVQTLLPNRLFVAEPVAARSCSFVGTHEYVSPEVASGHSHGNAVDWWSFGIFIYELIYGRTPFAASSNEATLRNILKKPLTFPTATPSSTLEVHAQDLISGLLNKEPSQRLGSKRGAADVKKHPFFKELNLALIRMLRPPEVPGSRRQKTTSLHHVKGRSKQQPTASFDCYF. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06065 463 FunFam protein kinase PINOID 177 245 - -
Seca12g06065 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Seca12g06065 463 FunFam protein kinase PINOID 2 83 176 - -
Seca12g06065 463 PANTHER FLIPPASE KINASE 1-RELATED 25 438 - -
Seca12g06065 463 MobiDBLite consensus disorder prediction 448 463 - -
Seca12g06065 463 ProSiteProfiles Protein kinase domain profile. 85 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06065 463 MobiDBLite consensus disorder prediction 432 463 - -
Seca12g06065 463 Gene3D Transferase(Phosphotransferase) domain 1 311 435 - -
Seca12g06065 463 Pfam Protein kinase domain 312 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06065 463 Pfam Protein kinase domain 85 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06065 463 Coils Coil 125 152 - -
Seca12g06065 463 FunFam serine/threonine-protein kinase D6PK-like 309 435 - -
Seca12g06065 463 SMART serkin_6 85 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06065 463 MobiDBLite consensus disorder prediction 1 24 - -
Seca12g06065 463 SUPERFAMILY Protein kinase-like (PK-like) 66 437 IPR011009 -
Seca12g06065 463 Gene3D Phosphorylase Kinase; domain 1 83 176 - -
Seca12g06065 463 Gene3D Transferase(Phosphotransferase) domain 1 177 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06065 Seca-Chr12 152543486 152545143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06065 12 462 AGC Kinase Gene Family AT2G34650 66.154 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca12g06065 Pkinase 3.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06065 - - vun:114177159 729.554