Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06058 ATGGCCTTTTACTTTGTAGCTATGCAGAGCCAAATTGTGTGTAATGGTTGTAGGAGCATTCTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATAACCTCTGTTCCCCCACCTGACTCTGATTTGATGCTTATATCTGAGGATGCTTACCATACTAATGCCCCTGCAGGGATGGATATGTCGCAACTTTATTGTGGAGGCTGTAGGACATTACTAATGTACACACGTGGAGCTACAAGTGTCAGATGTTCCTGCTGTCACACTGTAAACCTTGCTCCAGCATCAAATCAAGTTGCCCATATCCCTTGTGGGAACTGCCGGACAACACTCATGTATCCATATGGAGCTCCCTCAGTCAAATGTGCTGTTTGTCACTATATCACTAATGTCAGCATGCCCAATGGAAGGCTTCCAATTCCTGTCCATAGACCTAATGGGACAACCAACCCTGGAACAGTACCTTCTACTTCAACATCAATGCCCCATTCTCAGAGCCAAACAGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTTACAACAGATAAGAAATAG 606 0.4455 MAFYFVAMQSQIVCNGCRSILLYPRGATNVCCALCNTITSVPPPDSDLMLISEDAYHTNAPAGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPASNQVAHIPCGNCRTTLMYPYGAPSVKCAVCHYITNVSMPNGRLPIPVHRPNGTTNPGTVPSTSTSMPHSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06058 201 Pfam LSD1 zinc finger 109 133 IPR005735 -
Seca12g06058 201 Pfam LSD1 zinc finger 71 95 IPR005735 -
Seca12g06058 201 Pfam LSD1 zinc finger 14 38 IPR005735 -
Seca12g06058 201 NCBIfam zinc finger domain, LSD1 subclass 68 97 IPR005735 -
Seca12g06058 201 NCBIfam zinc finger domain, LSD1 subclass 11 41 IPR005735 -
Seca12g06058 201 NCBIfam zinc finger domain, LSD1 subclass 106 135 IPR005735 -
Seca12g06058 201 PANTHER PROTEIN LSD1 9 200 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06058 Seca-Chr12 152437777 152442390 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca12g06058 zf-LSD1 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06058 - - gmx:100776394 333.954