Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06056 ATGAAACAGTTGAAATTGGCTGCAGAATCTCACGCCAAAGAGGATAATCCCTCTAGGCACGAACCAGAAATGGAAAAAGCTCTTGAATCTTGTGACAGTCCAAGAAATAGAAAGATAACAGCTAGATGGGATCCAGAAAGAGCATGTCGGCCTATAATTGATAAAGCACCCGTGTTTCATCCGACTGCTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATACGTCCCATGGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCACCTTTCTGGATTCCACCTTGTCCACTTAAGGAGAAAGGTGTATGGGAAACAGCTAAGTTTCCCACTCGCATTCAACAAATTGATTTGCTTCAGAATAGGGAGCCCATGAGAAAGAAAAGTAGGGGAAGGAAACGAAAACGTAGAAGGCAATCAAAGATGGGAGCATATAGGAAAACTGCCAATTCAGGTTCTGCAGCTAATGTTGCTAATGAACCTGATGAGAAGAAGTTTGGATTCCGATCAGGGTCAGACTTCACACTTCAAAACTTTCAGAAATATGCTAATTTTTTCAAAGATTGCTACTTTGGGTTGAATGATGCCAATGAAGATAGAAAAGGTAGTGATAATAATCACCTGAAGACAAGGGAGCTCTCTGTGGAGGAGATTGAAGGCGAATACTGGAGAATAATAGAGGAACCAACTGATGAAGTTGAGGTGTATTATGGAGCTGACTTGCAAACTGGAGAACTTCGAAGTGGTTTTCCTAAGGCATCCTCAACTACAGGTGATTCAGATCGGTATGCCCTGTCTGGATGGAATCTGAATAACTTCGCTCGACTGCCAGGTTCTGCATTAAGTTTTGAAGGAAATGATATCTCAGGAGTTCTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCAACATTTTGCTGGCATGTTGAAGATCACCACCTGTATTCACTCAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGTGTACCTGGGAGCCATGCTTCTGGTTTGGAAGATGCAATGAAAAAGCACATGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGATTTGGTGACTCAGTTTTCTCCATCAATACTTAAATCTGAGGGGGTACCTGTATATCGCACTGTCCAGAATTCTGGGGAATTTGTTATCACCTTTCCAAGGGCATACCATGGTGGCTTCAACAGTGGCTTCAATTGTGCAGAGGCTGTGAATGCGGCTCCTTTTGATTGGTTTGTGCATGGTCAGAATGCTGCCGAGCTTTACAGTTTGCAGTGCCGTAAGACATCTCTGTCTCATGATAAGGTGCTATTTGGATCTGCTAAGGAAGCTGTACGAGCCCTTGCAGAGATAACTCTCCATAGAAAAGAAAATCTAAAATATTTAAAATGGAAAAGCGCTTGTGGGAAAGATGGAGTTCTTACTAAGGCAGTTAAGACAAGGGTAATGATGGAAAAAGAGAGGCTTGACTGTCTTCCTACTAATTTAAAGACGCTGAAGATGGACAGTGACTTTGATTCGAAGGATGAAAAAGAATGCTTCTCTTGTCTCTATGACTTGCACCTATCCGCTGTTGGTTGCAAGTGCTCTCCCGGCAGTTATTCTTGTCTCAGACACTCAAATTTGTTTTGCTCATGTGAAATGGCCGACAAATTTGTTCTGTTTCGATATACTATGAACGAGCTAAGTACATTGGTTGAAGCATTAGAAGGAGAACCCCATGCTATTAAAGTGTGGGCAAATATAATCACTGGAATGGCTTCTGCTAATGCTGAGGAGGCTTGCGTGTATGAAAAAGATGTGGAGAGTGCCATGTGCAAAATCAAGAGTTATGAAGAAGGGAAAAGCTCAACTAGTTATGCAGGAATTAATGACAAATCAAATTCAAATGTACCTAGCAGTCATTACAGTTACATTTCTTCAGAGTTGGTCCATTCAGAGTCTCATCATGAAACTTCTAGTACACCAAATGAGACTATAGATTGTCATAAGGGCAATATGAATGATAAAAACTTGGTCATGGAGCAGGGAGGTTCTGTGGATCTGAATAGTGATGTTATACCAGGTGAACCTGAAAATTATTTGCCAAATATTGCTGACAGCCATCACAATAAGGGTGTTCAATATGTGGAAAAAGTCTGCTATGCAGAGGCCAGAAAGGAAGATAAAAACATGAAAATGAATCCTGGTGGCATTGCTGTCTTGGAGAAAGATTTTTCCCCATGTTCAAGTGATGTTCGAAATACACTTGATGGTTGTAAATTGTTTGGGATAGATCTGAATATGCATTCAGATTCAGGAGAGCAACTCAACAATGTATTAAAAATGGGAGTTGTAGACACCTCCAATACAAGTATATCTTTGACAAACCGAAGCTTCCTAATTGACAAGTTTAATATTTCTGTTGAATCTGTAAGTTTAGGCTCTGTTGTGTATGGAAAGCTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTTAGCATTCTTGATCCAGCAAGCACCTGTAATTATGTTTCTGAAGTCATTGACGCTGGATTTATTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAAATGAGGCTTTTTCAAACACCTCAGTAGATAAGTGCTGGGAAACAGTTTTTGACAGACTAACTCATGAAATCAAGAGGCGAAGGAGTCTAGGTGAACAAGAACTTCCTCCCTTGGAACTTCTGCAAAGCATCAACGGTCATAGAATGTTTGGATTCCTCTCGCCATCCATTATTCAGTCAATTGAAGCTCAAGATCCTGGTCATCAATGTGTAGAGTACTGGAACCACAAAGGAGTTCTTTCTGATTCTTCAGGCAGGGAAATTGATGACAAGTTCACTCATGGTTCAAGTAACTCTCTAGGTAACATCAAAACCAAACTTTTTGGTGTTGATTTGATAAAGCTGGAGGAAGATAACATTGGAGAAAGTTGTCATTCATTTGAAGAGATGAAATTGATGCTACAAGGATTCTTAAAAAAGGCAAGTCCTGATGAGTTAGTTGCAATGCAGAAGCTATTCAACTCTGATGCACAATTAACTCAGTGGAGAGTGGCAATTGTAACGCTGATCGAGGAAATCCAGAAGGCTTGTGTTGTGCATAACCAAAATTAG 3174 0.4061 MKQLKLAAESHAKEDNPSRHEPEMEKALESCDSPRNRKITARWDPERACRPIIDKAPVFHPTAEEFEDTLGYIAKIRPMAEPYGICRIVPPPFWIPPCPLKEKGVWETAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRRQSKMGAYRKTANSGSAANVANEPDEKKFGFRSGSDFTLQNFQKYANFFKDCYFGLNDANEDRKGSDNNHLKTRELSVEEIEGEYWRIIEEPTDEVEVYYGADLQTGELRSGFPKASSTTGDSDRYALSGWNLNNFARLPGSALSFEGNDISGVLVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASGLEDAMKKHMPDLFEEQPNLLNDLVTQFSPSILKSEGVPVYRTVQNSGEFVITFPRAYHGGFNSGFNCAEAVNAAPFDWFVHGQNAAELYSLQCRKTSLSHDKVLFGSAKEAVRALAEITLHRKENLKYLKWKSACGKDGVLTKAVKTRVMMEKERLDCLPTNLKTLKMDSDFDSKDEKECFSCLYDLHLSAVGCKCSPGSYSCLRHSNLFCSCEMADKFVLFRYTMNELSTLVEALEGEPHAIKVWANIITGMASANAEEACVYEKDVESAMCKIKSYEEGKSSTSYAGINDKSNSNVPSSHYSYISSELVHSESHHETSSTPNETIDCHKGNMNDKNLVMEQGGSVDLNSDVIPGEPENYLPNIADSHHNKGVQYVEKVCYAEARKEDKNMKMNPGGIAVLEKDFSPCSSDVRNTLDGCKLFGIDLNMHSDSGEQLNNVLKMGVVDTSNTSISLTNRSFLIDKFNISVESVSLGSVVYGKLWCSKHAIYPKGFKSRVKFFSILDPASTCNYVSEVIDAGFIGPLFKVTMEEHPNEAFSNTSVDKCWETVFDRLTHEIKRRRSLGEQELPPLELLQSINGHRMFGFLSPSIIQSIEAQDPGHQCVEYWNHKGVLSDSSGREIDDKFTHGSSNSLGNIKTKLFGVDLIKLEEDNIGESCHSFEEMKLMLQGFLKKASPDELVAMQKLFNSDAQLTQWRVAIVTLIEEIQKACVVHNQN. 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06056 1057 MobiDBLite consensus disorder prediction 1 37 - -
Seca12g06056 1057 Pfam F/Y-rich N-terminus 812 856 IPR003888 GO:0005634
Seca12g06056 1057 Gene3D - 807 945 - -
Seca12g06056 1057 SMART JmjN_1 55 96 IPR003349 -
Seca12g06056 1057 SMART fyrn_3 815 859 IPR003888 GO:0005634
Seca12g06056 1057 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Seca12g06056 1057 Pfam F/Y rich C-terminus 863 949 IPR003889 GO:0005634
Seca12g06056 1057 SUPERFAMILY Clavaminate synthase-like 264 450 - -
Seca12g06056 1057 Pfam JmjC domain, hydroxylase 297 412 IPR003347 -
Seca12g06056 1057 ProSiteProfiles JmjC domain profile. 267 430 IPR003347 -
Seca12g06056 1057 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 754 - -
Seca12g06056 1057 FunFam Putative lysine-specific demethylase JMJ16 807 945 - -
Seca12g06056 1057 SMART fyrc_3 865 960 IPR003889 GO:0005634
Seca12g06056 1057 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Seca12g06056 1057 MobiDBLite consensus disorder prediction 121 160 - -
Seca12g06056 1057 Pfam jmjN domain 57 90 IPR003349 -
Seca12g06056 1057 SMART cupin_9 267 430 IPR003347 -
Seca12g06056 1057 ProSiteProfiles FYR domain FYRN motif profile. 801 859 IPR003888 GO:0005634
Seca12g06056 1057 MobiDBLite consensus disorder prediction 128 145 - -
Seca12g06056 1057 Gene3D Cupin 41 414 - -
Seca12g06056 1057 ProSiteProfiles FYR domain FYRC motif profile. 861 951 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06056 Seca-Chr12 152406317 152415017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06056 803 987 JUMONJI Transcription Factor Family AT1G30810 52.973 4.83e-52 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca12g06056 JmjC 1.5e-44 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06056 K11446 - gmx:100784581 1617.82