Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06053 ATGCTTGGTGGGGCTTTGCATTCCAAAACCCAAATGGGGTACACACATTTGGTGGTGCTGTGTTTCTTGGGGATGCTTCTAATACCTTCCTTGTGTCAAGATGATTCAGATTATGTAACTACTGCTGTGTACATTGTTACTCTCAGACAAGCCCCTGCTTCTCACTATGAGGATGAGTTAACCAGAGTGGGTAACCACTTCAGACATGGTAGTTCTGGGAGAACTAGACTTCACAAACCAAGACATTCAAATGTTACAAGGACAGATAGGAGACATGGCTCTTACATTGCCCAAATTCATGACTCGTTGTTGAAGAAGGTGTTTAAAGGGGAGAAATATCTGAAGCTCTATAGCTATCATTACTTGATCAATGGGTTTGCTGTGCTGGTTACCCAACAGCAGGCAGAGAAGCTATCAAGGAGAAGAGAAGTGTCCAATGTGGTTTTGGATTTTTCTGTAAGAACTGCAACCACCCATACTCCACAATTTCTAGGTCTGCCACAGGGAGCTTGGTTTCAATCAGGTGGGTTTGAAACTGCTGGAGAAGGAATCACAATTGCCTTTGTTGACACTGGCATTGATCCTACACACCCTAGTTTTGCTGATGATAAAACAGAACATCCATTCCCTGTTCCTGCTCATTTTTCTGGCATTTGTGAGGTTACCAGGGATTTTCCATCTGGTTCTTGCAATAGGAAGCTTGTTGGAGCCCGTCATTTTGCAGCATCTGCTATAACCAGAGGAATATTCAATTCATCTGAGGACTATCCTTCTCCTTTTGATGGTGATGGCCATGGCACGCACACAGCTTCTGTTGCAGCTGGAAACCATGGAATTCCTGTGGTTGTTGCTGGGCATCATTTTGGAAATGCTAGTGGGATGGCTCCTCGTTCACACATTGCTGTTTACAAGGCATTATACAAAAGATTAGGAGGATTTGCTGCAGATGTTGTTGCAGCTATTGACCAGGCAGCACAGGATAGGGTTGACATAATATGCCTGTCAATCACTCCTAATAGGCGTCCTCCTGGTATTGCAACTTTCTTCAATCCAATAGACATGGCATTGCTGTCAGCTGTAAAAGCTGGTATTTTTGTAGTGCAAGCTGCTGGAAATACTGGACCATCACCTATGAGCATGTCCTCTTTTAGTCCATGGATCTTTACTATTGGTGCCACCTCTCATGATCGAGCTTATAGCAACTCTCTATTACTTGGAAATAATTTGACCATACTTGGAGTTGGACTTGCACCTGGCACAGATGAGAACACACTGTATAAATTGATTCATGCAAAGCATGCTTTGAACAATGAAACAACGGTTGCTGATGATATGTATGTTGGTGAGTGCCTAGATGCAAGTAAACTCGATCAGGATTTGGTCCAGGGCAACCTCCTGATCTGTAGCTATTCAATCCGATTTGTGCTTGGACTCTCCAGCATCAAACAGGCCTTAGAAACAGCCAAGAACCTTAGTGCAGTTGGTGTTATTTTTCCCATGGATCCTTTTGTGACTGGTTTTCAGCTTAATCCAATTCCAATGAAAATACCCGGTATAATAATTCCATCTGCAAATGATTCCAAGATATTACTGCAGTACTACAATTCTTCACTGGAAACAGATGAGGCTTCAAATAAAATTGTGAAATTTGGGGCCGTTGCTAGCATTTGTGGTGGACTAAAAGCCAACTACAGTAATGTTGCTCCAAAGGTTATGTTTTACTCTGCCAGAGGACCAGATCCAGAGGACAGTCTTCCTCATGAAGCTGACATTTTGAAACCCAATTTGGTAGCTCCTGGAAATTTTATATGGGCTGCTTGGAGTTCTCTTGCCACTGATTCAGCTGAATTTCTAGGTGAGAATTTTGCAATGATGTCTGGCACAAGCATGGCTGCACCTCATGTTGCTGGTCTTGCTGCACTAGTTAAGCAAAAGTTTCCCAATTTCAGTCCAGCAGCCATTGGATCTGTGCTTTCCACCACAGCTTCTCTGTATGACAACAATGGGAAGCCAATAATGTCTCAGCGATCCTATGCCTCCCCAGACCTAAACCAATCTCCAGCAACTCCCTTTGACATGGGAAGTGGTTTTGTGAATGCTACTGCAGCATTAAATCCGGGATTGCTTTTTGATTCTAGTTATGATGATTACATGTCATTTCTATGTGCTATCAATGGTTCAGCTCCTGTATTGCTAAACTACACTGGTCAGAACTGTTGGATGTATAATTCTACTGTATATGGCTCTGATCTGAACTTGCCCTCAATCACAATAGCAAATTTGAACCAATCTAGAGTAGTACAAAGAACAGTCCAAAACATTGCTGGAAATGAAACTTACAGTGTTGGTTGGAGTTCTCCATATGGGGTTTCAGTGAAAGTATCTCCAACTCTCTTCTCTCTTGCCAATGGGGAGAAACAAGTCTTGTCTGTGATCTTTAATGCAACCAGCAACAGCTCTGCTGCCAGCTTTGGGAGGATTGGGCTGTTTGGTAACCAAGGTCATGTAGTCAACATTCCTGTGTCAGTCATTGTTAAAATCTCATATAACTTCACTATGAGCTAA 2565 0.4273 MLGGALHSKTQMGYTHLVVLCFLGMLLIPSLCQDDSDYVTTAVYIVTLRQAPASHYEDELTRVGNHFRHGSSGRTRLHKPRHSNVTRTDRRHGSYIAQIHDSLLKKVFKGEKYLKLYSYHYLINGFAVLVTQQQAEKLSRRREVSNVVLDFSVRTATTHTPQFLGLPQGAWFQSGGFETAGEGITIAFVDTGIDPTHPSFADDKTEHPFPVPAHFSGICEVTRDFPSGSCNRKLVGARHFAASAITRGIFNSSEDYPSPFDGDGHGTHTASVAAGNHGIPVVVAGHHFGNASGMAPRSHIAVYKALYKRLGGFAADVVAAIDQAAQDRVDIICLSITPNRRPPGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPMSMSSFSPWIFTIGATSHDRAYSNSLLLGNNLTILGVGLAPGTDENTLYKLIHAKHALNNETTVADDMYVGECLDASKLDQDLVQGNLLICSYSIRFVLGLSSIKQALETAKNLSAVGVIFPMDPFVTGFQLNPIPMKIPGIIIPSANDSKILLQYYNSSLETDEASNKIVKFGAVASICGGLKANYSNVAPKVMFYSARGPDPEDSLPHEADILKPNLVAPGNFIWAAWSSLATDSAEFLGENFAMMSGTSMAAPHVAGLAALVKQKFPNFSPAAIGSVLSTTASLYDNNGKPIMSQRSYASPDLNQSPATPFDMGSGFVNATAALNPGLLFDSSYDDYMSFLCAINGSAPVLLNYTGQNCWMYNSTVYGSDLNLPSITIANLNQSRVVQRTVQNIAGNETYSVGWSSPYGVSVKVSPTLFSLANGEKQVLSVIFNATSNSSAASFGRIGLFGNQGHVVNIPVSVIVKISYNFTMS. 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06053 854 Pfam Fibronectin type-III domain 750 843 IPR041469 -
Seca12g06053 854 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 109 842 IPR045051 -
Seca12g06053 854 Gene3D Peptidase S8/S53 domain 183 717 IPR036852 GO:0004252|GO:0006508
Seca12g06053 854 Pfam Subtilase family 181 669 IPR000209 GO:0006508|GO:0008236
Seca12g06053 854 CDD Peptidases_S8_3 156 663 IPR034197 -
Seca12g06053 854 ProSiteProfiles Serine proteases, subtilase domain profile. 161 704 - -
Seca12g06053 854 ProSitePatterns Serine proteases, subtilase family, serine active site. 627 637 IPR023828 -
Seca12g06053 854 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 30 154 IPR037045 -
Seca12g06053 854 Gene3D - 396 554 - -
Seca12g06053 854 MobiDBLite consensus disorder prediction 67 88 - -
Seca12g06053 854 Pfam Peptidase inhibitor I9 43 156 IPR010259 -
Seca12g06053 854 PRINTS Subtilisin serine protease family (S8) signature 261 274 IPR015500 -
Seca12g06053 854 PRINTS Subtilisin serine protease family (S8) signature 626 642 IPR015500 -
Seca12g06053 854 PRINTS Subtilisin serine protease family (S8) signature 181 200 IPR015500 -
Seca12g06053 854 CDD PA_subtilisin_like 402 537 - -
Seca12g06053 854 Gene3D - 721 845 - -
Seca12g06053 854 MobiDBLite consensus disorder prediction 69 86 - -
Seca12g06053 854 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 186 197 IPR023827 -
Seca12g06053 854 SUPERFAMILY Subtilisin-like 156 708 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06053 Seca-Chr12 152374134 152380309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06053 18 848 Subtilisin-like Serine Gene Family AT4G20430 69.395 0.0 1185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06053 - - gmx:100814065 1404.42