Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06052 ATGCCTTTGTTTTCTCAATCACTTCTTCATTTTCCCTTATTAACCATCCTCCTTTCCCTTAATCTACACAACCTTTTGGTTGGTGTATCATCAACCACTCTAAGCATAACCACAGACAGAGAAGCCTTGATTTCATTGAAGTCACAATTGAGTAATGACACTTCACACCCTTTATCCTCTTGGAGCCAGAACTCATCTCCATGCAATTGGACTGGTGTCCTTTGTGACAAGCATGGCCAGAGAGTGACAAGCCTTGATCTTTCAAGCTTGGGACTCTCAGGTCACATAAGCCCTTATATTGGTAACCTGACCTCTCTTCAGTCCCTCCAATTGCAGGATAACCAGCTCACAGGAGTGATCCCTGACCAAATTACCAACCTATTCAGTTTGAGAGTTCTAAATATGAGCTCTAACAGATTGGAAGGAATGCTTCCTTCAAATATCACCCACTTGGATGAGCTTCAGATTCTTGATTTATCCTCAAACAAGATTGTCAGCAAAATTCCTGAAGATATCAGCAGCTTGAAAAAGCTAGAGGTCTTGAAACTGGGAAGGAATAGCCTCTATGGTGCAATCCCAGCAGCTCTAGGAAACATTTCTTCTCTAAAAAATATCAGCTTTGGCACCAACTCTCTCAGTGGTTGGATTCCCAGTGAATTGGGTAGGCTCCATAATTTGATTGAGCTTGATCTCACTCTTAACAATCTCACTGGGACTGTTCCACCTGTTATATACAACTTGTCTTCCCTTGTTAACTTGGCCTTAGCTGCAAATTCTCTCTGGGGTGAGATTCCTCAGGATGTTGGTCATAGACTTCCAAATCTCCTAGTCTTCAATTTCTGCTTCAATAAATTCACTGGTAGAATTCCAGGGTCATTGCATAACCTCACCAACATTAGGGTCATTCGCATGGCTTCCAACCATTTGGAAGGAACAGTACCACCTGGTTTGGGAAATCTTCCATTTCTTCACATGTATAATATTGGTTACAACAGGATAGTTAGCTCAGGAGTCAAAGGTTTGGACTTCATTACTTCTTTAACAAACAGCACTCACCTGAACTTTCTAGCAATTGATGGCAATATGCTGGAAGGTGTAATTCCTGAAACCATTGGCAATCTCTCCAAGGAACTCTCAAAATTATACATGGGAGGGAATCGTTTCAATGGAAGCATACCATCCTCCATTGGTCATCTTAGTGGCTTAAAGTTGTTAAACTTGAGCTACAATTCAATCACTGGAGAAATTCCAAAGGAGTTAGGCCAGTTAGAGGAACTACAAGAGTTATCTCTGGCTGGAAATCAGATATCAGGAGGTATTCCAAACTCCCTTGGCAATCTCATGAAGTTAAACCAGATTGATTTGTCAAGAAATGAGCTTGTAGGTACAATACCAAGCAGTTTTGGGAATTTTCAAAACCTGCTCTATATGGACTTATCCAGCAACAAACTCAATGGAAGCATACCTGTGCAAATCCTCAATCTCCCAACTTTGAGCAATGTTTTGAACCTGTCTATGAACTTGTTGAGTGGACCAATACCTCAAGTTGGGAAATTGATTAGTATTGCCACCATTGACTTTTCTAACAACCAATTATATGGTGGCATTCCAAGCTCATTCAGCAATTGTCCAAGCTTGGAGAAATTGTTTTTGGCCCGGAATCAGCTTTCAGGTCCCATTCCAAAATCTCTTGGAGATATTAGAGGCTTGGAAACTTTGGACCTGTCCTCCAACCAACTCTCTGGATCCATTCCTATTGAACTTCAAAATCTACATGTCCTACAGTTTTTAAACCTCTCTTACAATGATTTAGAAGGAGCCATTCCTAGTGGTGGAGTTTTCCAAAATCTCTCTGCTGTCCATTTAGAAGGCAATAGTAAACTCTGCTTGCATTTTGCATGTCTGCCTCATGGCAATGGAAGAAGACATGCAAGACTTTACATCATCATAGCCATTGTGGTGACATTGGTACTATGTCTCACAATTGGCTTGCTGATATACATAAAGAACAGAAAGGTGAAGGTCATAGCAGCAGCAGCATCTGAACTGCTAAAGCCTCAGACTCCTATGCTCTCTTATGATGAACTTCGTATAGCAACTGAGGAGTTCAACCAGGAAAATTTACTAGGACGTGGGAGCTTTGGCTCAGTATACACAGGCCATCTAAGTCATGGAACTACTGTTGCAGTGAAAGTGCTTGACACTCTAAGAACTGGTTCTTTGAAGAGTTTCTTTGCTGAGTGTGAGGCTATGAAGAACTCAAGGCATAGAAATCTAGTTAAGCTGATCACATCATGCTCTAGCGTTGACTTCAAAAACAATGACTTTCTGGCTCTGGTGTATGAGTACTTATGTAATGGGAGCTTGGAAGATTGGATTAAGGGGAGGAGAAAACATGCAAATGGAAATGGATTGAACCTTATGGAGAGACTTAATATAGCTATAGGTGCTGCTTGTGCATTGGATTACCTTCACAATGACAGTGAAATTCCCATTGTGCATTGTGATTTGAAGCCTAGCAACATTCTCCTGGATGAAGATATGACTGCAAAAGTTGGGGACTTTGGATTGGCTAGGCTATTGATTCAAAGATCAACTGATCAAGTTTCCATTAGCTCCACTCATGTCCTCAAGGGTTCATTTGGTTACATACCTCCAGAATATGGATGGGGAGAGAAACCATCTGCAGCTGGAGATGTGTATAGTTTTGGGATTGTGTTATTAGAACTCTTCTCAGGGAAAAGTCCAATAGATGAGTGCTTCACAGGAGGCCTAAGCATAACAAAATGGGTACAATCAGCTTTCAAAAACAAGACTGTGCAAGTTATTGACCCTCAGCTGCTATCTTTCATTTTTCATGATGATGACCCTGACAAAGGTCCCAATCATGAACTCTATTGTGTGGATGCAATTGTAGGAGTTGGCCTTTCCTGCACTGGTGACAATCCAGATGAACGCATTGGCATTAGAGATGTTGTTCGCCAACTGAAAGCTGCTAGAGACTCTCTTTTGAAAAATTCTGATATTAAGAGTGCTACTAGTACTAGTACTACCAAGCGTTATTTTCAAGTTTCAGTAAAATGA 3084 0.4105 MPLFSQSLLHFPLLTILLSLNLHNLLVGVSSTTLSITTDREALISLKSQLSNDTSHPLSSWSQNSSPCNWTGVLCDKHGQRVTSLDLSSLGLSGHISPYIGNLTSLQSLQLQDNQLTGVIPDQITNLFSLRVLNMSSNRLEGMLPSNITHLDELQILDLSSNKIVSKIPEDISSLKKLEVLKLGRNSLYGAIPAALGNISSLKNISFGTNSLSGWIPSELGRLHNLIELDLTLNNLTGTVPPVIYNLSSLVNLALAANSLWGEIPQDVGHRLPNLLVFNFCFNKFTGRIPGSLHNLTNIRVIRMASNHLEGTVPPGLGNLPFLHMYNIGYNRIVSSGVKGLDFITSLTNSTHLNFLAIDGNMLEGVIPETIGNLSKELSKLYMGGNRFNGSIPSSIGHLSGLKLLNLSYNSITGEIPKELGQLEELQELSLAGNQISGGIPNSLGNLMKLNQIDLSRNELVGTIPSSFGNFQNLLYMDLSSNKLNGSIPVQILNLPTLSNVLNLSMNLLSGPIPQVGKLISIATIDFSNNQLYGGIPSSFSNCPSLEKLFLARNQLSGPIPKSLGDIRGLETLDLSSNQLSGSIPIELQNLHVLQFLNLSYNDLEGAIPSGGVFQNLSAVHLEGNSKLCLHFACLPHGNGRRHARLYIIIAIVVTLVLCLTIGLLIYIKNRKVKVIAAAASELLKPQTPMLSYDELRIATEEFNQENLLGRGSFGSVYTGHLSHGTTVAVKVLDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFLALVYEYLCNGSLEDWIKGRRKHANGNGLNLMERLNIAIGAACALDYLHNDSEIPIVHCDLKPSNILLDEDMTAKVGDFGLARLLIQRSTDQVSISSTHVLKGSFGYIPPEYGWGEKPSAAGDVYSFGIVLLELFSGKSPIDECFTGGLSITKWVQSAFKNKTVQVIDPQLLSFIFHDDDPDKGPNHELYCVDAIVGVGLSCTGDNPDERIGIRDVVRQLKAARDSLLKNSDIKSATSTSTTKRYFQVSVK. 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06052 1027 FunFam Receptor protein kinase CLAVATA1 35 193 - -
Seca12g06052 1027 Gene3D Transferase(Phosphotransferase) domain 1 784 1021 - -
Seca12g06052 1027 FunFam LRR receptor-like serine/threonine-protein kinase EFR 674 783 - -
Seca12g06052 1027 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Seca12g06052 1027 Gene3D Phosphorylase Kinase; domain 1 674 783 - -
Seca12g06052 1027 SMART LRR_typ_2 399 422 IPR003591 -
Seca12g06052 1027 SMART LRR_typ_2 296 320 IPR003591 -
Seca12g06052 1027 SMART LRR_typ_2 223 247 IPR003591 -
Seca12g06052 1027 SMART LRR_typ_2 471 495 IPR003591 -
Seca12g06052 1027 SMART LRR_typ_2 103 126 IPR003591 -
Seca12g06052 1027 SMART LRR_typ_2 567 590 IPR003591 -
Seca12g06052 1027 SMART LRR_typ_2 423 447 IPR003591 -
Seca12g06052 1027 SMART LRR_typ_2 591 616 IPR003591 -
Seca12g06052 1027 SMART LRR_typ_2 127 150 IPR003591 -
Seca12g06052 1027 SMART LRR_typ_2 151 175 IPR003591 -
Seca12g06052 1027 Gene3D Ribonuclease Inhibitor 235 338 IPR032675 -
Seca12g06052 1027 ProSitePatterns Protein kinases ATP-binding region signature. 709 731 IPR017441 GO:0005524
Seca12g06052 1027 SMART serkin_6 703 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06052 1027 Pfam Protein kinase domain 704 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06052 1027 SUPERFAMILY RNI-like 252 610 - -
Seca12g06052 1027 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 233 340 - -
Seca12g06052 1027 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Seca12g06052 1027 Pfam Leucine rich repeat 377 436 IPR001611 GO:0005515
Seca12g06052 1027 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Seca12g06052 1027 FunFam Inactive leucine-rich repeat receptor-like protein kinase 345 636 - -
Seca12g06052 1027 SUPERFAMILY L domain-like 37 333 - -
Seca12g06052 1027 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Seca12g06052 1027 ProSiteProfiles Leucine-rich repeat profile. 569 592 IPR001611 GO:0005515
Seca12g06052 1027 CDD STKc_IRAK 709 997 - -
Seca12g06052 1027 SMART LRR_sd22_2 151 174 - -
Seca12g06052 1027 SMART LRR_sd22_2 567 588 - -
Seca12g06052 1027 SMART LRR_sd22_2 223 249 - -
Seca12g06052 1027 SMART LRR_sd22_2 175 207 - -
Seca12g06052 1027 SMART LRR_sd22_2 423 449 - -
Seca12g06052 1027 SMART LRR_sd22_2 471 497 - -
Seca12g06052 1027 SMART LRR_sd22_2 103 129 - -
Seca12g06052 1027 Gene3D Ribonuclease Inhibitor 34 234 IPR032675 -
Seca12g06052 1027 PANTHER OS04G0122200 PROTEIN 221 998 - -
Seca12g06052 1027 Gene3D Ribonuclease Inhibitor 339 636 IPR032675 -
Seca12g06052 1027 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 784 1008 - -
Seca12g06052 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Seca12g06052 1027 SUPERFAMILY Protein kinase-like (PK-like) 685 996 IPR011009 -
Seca12g06052 1027 ProSiteProfiles Protein kinase domain profile. 703 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06052 Seca-Chr12 152366048 152369860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06052 38 1007 Receptor kinase-like Gene Family AT3G47570 41.129 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca12g06052 Pkinase 8.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06052 - - gmx:100783512 1687.93