Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06030 ATGTGTCCAGTGTCCTTCAATTATGTGTTAACTGTCCCTTGGAACTCCTCTACTTGCCTTAACTTCCAACCTTTCCCATCCCAAAACCAAACACACACAAGTCTTTGTTGCCAAACACTGTTATCCCTCTTTGGCATTGCCCTTGCACAATACCTAAAAAAAAACTATCTTTTCCATCTCCCCAACCTCCCTACCTCTATGTCATGCCTTCAAAATTTCCAAACCAAACTCAATTCTCTCTCACTTCCTAATAACCTTGTGTCCTCTTGCTTTGACCCTCTTCAATTTGTGATCACTCCCAACATCTGTGCTCATATTCAGTCCAAGCAAGATTGGCTCAAAAGGGTTGGTCCTGCACCATTGCTCAACACTGCATGTAAACCAGACCTCAGTGTTCTTGCCAATTGTGGTGCATGTACAGATGAGGGTCTCAAGGTTCTGCAGATACTCACTGCCATTGATGGTAACACTTCACATTCCAAAGATTGCTTTTACTTCACAGTACTTTATATTGTTGGAATTGTGAATGAGTTTGGCCCTGAAAGCAAAGGTGCTATGACTTGCATCCTTGAATTGCCTGTAAATTCTGAGGTGGATTCCAGAAATAAGGGCAATCATCATCATCATCATGCTCTTGTTATAGGGATAGTTGGAGCTTCAGTTGCATTTCTAGTTATTTATTGGTATAAGAGAAAAAATAGTGGAAATTTGCTAGTCAATGCTGATCCACAGGAAGAAAGGTCCATCCTAAGATTGAGACCAAACACAGGGTCAATTTGGTTCAAGTTTGAGGATCTTGAAAAGGCCACAAACAAATTCTCACCACAGAATTTAATTGGTAGAGGTGGATTTGGGTCTGTTTACAAGGGGATTCTACATGATGGCACAATGGTTGCTGTTAAAAGGATTGAAGAATCTGATTTTCAAGGAGATGCTGAGTTTTATAATGAAGTGGAGATTATTAGCAACTTGAAGCACCGCAATTTAGTGCCACTAAGAGGGTATCTTGTTCATGATTATATGCTGAATGGTAGCCTTAAAGATCATCTTTTTCCAATCATGGACAATGAAAATGAAAAGAAATCATTGACTTGGCCTCAAAGAAAAAGCATAATCTTGGATGTGGCAAATGGGTCTCAGCTAAATACTAGAGTAGCTGGAACTCATGGATATCTAGCCCCAGAATATGCACTTTATGGCCAACTTAGTGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGAAGAAAAGCTCTTGAGTTGGCTTCTTCAGGAACACCAGCTTTCTTGATCGCAGATTGGGTTTGGTCATTGATGAAATCAGGAAAGTTAGTAGAAGCTTTGGATGCTTCTATTTTAAGATTTTTGCTGGTTGGAATTCTGTCTTCTCATGTAATGGTTGCTTCAAGGCCAACAATTTTGGATGCTCTGAAGATGTTAGAAGGGGACATTGAAGTTCCACCAATTCCGGATAGGCCAATGACTCTTGGGCATTATATGTTTTCCAAAGACACAAGCACAACCACTTGTTGCAAAACTTTGTTGAATCTCTTTGGTATAGCACTTGCAGATAACCTCAAGAAAAACTCTCTTTTCCATCTCCCTAACATCTCTACCTCTATCTCATGCCTTGAGGATTACCAATCAAAGCTCACTTCTCTTTTACTTCCCAATAACCTTGTTTCCTCTTGCTTTGATCCACTTCAATTTGTTATTAGCCCCAATATTTGTGCTAATATTCAAACTAAGCAAGATTGGATCAATAGGGTTGGTCCCTCAAATACAGCACTTGACACTGCTTGTCAGATGGTGGCACGTATTGATGGTAATGATTCACATTCCCAAGATTGTTTTTACTTCACAATACTTTATATTGCTGGAATTGTGAATAAGTTTGGCCCTGAGAGCAAAGGATTGTTATTTTGGTACAAAAGGTGGGTGAAGAGAAAAAGTATTGAAAAATTGTTAGCCTCTTTTGAATCACAAGAGGAAACAAGGTCTAGTCAGAGATTGAGACCAAATGCAGGGCTAATTTGGTTCAAGTTTGAGGACCTTGTGAAGGCTACCAACAATTTTTCACCTCAGAACTTTATTGGCAGAGGTGGGTCTGGGTCAGTTTACAAGGGGATTCTACCTGATGGTAAAATGGTTGCTGTTAAAAGGATTGAAGAATCAGATTATCAAGGAGATGCTGAGTTTTATAGAGAGGTGGGGATTGCTTTTGATGTTTCTGTCTTAACAGATGAAAGTTCTACTAGAAACATAATGGAGAGGTTTTTACTGGTTGGAATTCTGTCTTCTCATGTAATTGCTGCTTCAAGGCCAACAATTTTGGATGCTTTGAGGATGTTAGAAGGGGATATTGAGGTTCCACCAATTCCAGATAGGCCAATGTCTCTTGGCCATTACATGTTTCCCAGTGGTGATAGTTTTGGGATGAACACAGAATTTGGGTTTGAAGGCTTATCTCGGTTTGAGAATCCATCTTTGAAAAATTGGACTAGAACAAATTGA 2532 0.3957 MCPVSFNYVLTVPWNSSTCLNFQPFPSQNQTHTSLCCQTLLSLFGIALAQYLKKNYLFHLPNLPTSMSCLQNFQTKLNSLSLPNNLVSSCFDPLQFVITPNICAHIQSKQDWLKRVGPAPLLNTACKPDLSVLANCGACTDEGLKVLQILTAIDGNTSHSKDCFYFTVLYIVGIVNEFGPESKGAMTCILELPVNSEVDSRNKGNHHHHHALVIGIVGASVAFLVIYWYKRKNSGNLLVNADPQEERSILRLRPNTGSIWFKFEDLEKATNKFSPQNLIGRGGFGSVYKGILHDGTMVAVKRIEESDFQGDAEFYNEVEIISNLKHRNLVPLRGYLVHDYMLNGSLKDHLFPIMDNENEKKSLTWPQRKSIILDVANGSQLNTRVAGTHGYLAPEYALYGQLSEKSDVYSFGVVVLEIMCGRKALELASSGTPAFLIADWVWSLMKSGKLVEALDASILRFLLVGILSSHVMVASRPTILDALKMLEGDIEVPPIPDRPMTLGHYMFSKDTSTTTCCKTLLNLFGIALADNLKKNSLFHLPNISTSISCLEDYQSKLTSLLLPNNLVSSCFDPLQFVISPNICANIQTKQDWINRVGPSNTALDTACQMVARIDGNDSHSQDCFYFTILYIAGIVNKFGPESKGLLFWYKRWVKRKSIEKLLASFESQEETRSSQRLRPNAGLIWFKFEDLVKATNNFSPQNFIGRGGSGSVYKGILPDGKMVAVKRIEESDYQGDAEFYREVGIAFDVSVLTDESSTRNIMERFLLVGILSSHVIAASRPTILDALRMLEGDIEVPPIPDRPMSLGHYMFPSGDSFGMNTEFGFEGLSRFENPSLKNWTRTN. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06030 843 SUPERFAMILY Protein kinase-like (PK-like) 257 512 IPR011009 -
Seca12g06030 843 SUPERFAMILY Protein kinase-like (PK-like) 676 745 IPR011009 -
Seca12g06030 843 FunFam Receptor-like serine/threonine-protein kinase At4g25390 239 350 - -
Seca12g06030 843 Pfam Protein kinase domain 276 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06030 843 Gene3D Transferase(Phosphotransferase) domain 1 377 502 - -
Seca12g06030 843 Gene3D Phosphorylase Kinase; domain 1 239 342 - -
Seca12g06030 843 Gene3D Phosphorylase Kinase; domain 1 659 751 - -
Seca12g06030 843 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Seca12g06030 843 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 644 744 - -
Seca12g06030 843 Pfam SPARK 2 164 IPR043891 -
Seca12g06030 843 Pfam SPARK 510 610 IPR043891 -
Seca12g06030 843 Pfam Protein tyrosine and serine/threonine kinase 390 423 IPR001245 GO:0004672|GO:0006468
Seca12g06030 843 ProSiteProfiles Protein kinase domain profile. 273 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06030 843 ProSitePatterns Protein kinases ATP-binding region signature. 704 726 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06030 Seca-Chr12 152159907 152166493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06030 746 808 Receptor kinase-like Gene Family AT1G11050 64.179 3.64e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Seca12g06030 SPARK 3.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06030 - - gmx:100788367 674.855