Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06028 ATGGAGAAGTACGAGCTAGAGAAGCAGGTAGGACATGTGGACCACACGGTGGTAAAGGTCATGCGCCATAAACAGACCAAAGACCTTGTTGCCGTCAAATACATTCCACGGGGCAATAAGATTGATGAGAGGCTGAAGAGAGAAATCATAAACCATAGATCTCTTCACCATCCGAATATTATTGCCTTCAAGGAGTTGGTTTTGACTCCAACACACATTGCAATAGTCATGGAGTATGCATCGGGTGGAGATCTGTATGACCATCTTTGTAATGTATGCTTATGTGAAAATGAGTCTTGTTGTGAACTCCAAACATTTCAGGTTCGGTATTTCTTTCAGCAGTTAATTTCAGGAGTTAGTTATTGTCATGACATGGAAATATGTCACCGAGATTTGAAGTTGGAGAACACTTTATTGGAGGGCAAATGTCTTAAAATTTGTGATTTCGGCTACTCTAAGTCATATCTAATTCACTCAAGGGCTAATTCAATGATTGGAACTCCAGCTTATATTGCACCGGAGATTTTTTCTGACAAAGAATATGATGGAAAGTTGGCAGATATATGGTCCTGTGGGGTGATACTTTATGTGATGCTGGTGGGATCATTGCCATTTGATGACCCAGAGGATCGCTGCAATTTAAGAAAAACAATAAAACGAATTATGGATGTTCAATACAAGATCCCAGACGATGTTTACATATCTCAAGGCTGTAGAAATCTGATATCTCGCATTTTTGTGGCAGATCCAAAAAAGAGAATTACCATGAAGGAAATTAAGTCCCACCCATGGTTTTTAAATAACTTGCCTAAGGAATTGACAGAAGAGGCTCAAACTCTTCACTACAGATCAAAAGAAAACTCAAGCTCTGCTCAAAGTATAGAAGACATCATGAAAATTATTTACCAGGCCAAAACTCTACCTGCACCTGCTTCCAGTGTTAACCGGGCCAAAACTATACCTTCAACTTCAGGTCCAATTCTATTAGAGGATTTTAGCTTGAGGTGTAGAATAAGTAACTAG 1023 0.393 MEKYELEKQVGHVDHTVVKVMRHKQTKDLVAVKYIPRGNKIDERLKREIINHRSLHHPNIIAFKELVLTPTHIAIVMEYASGGDLYDHLCNVCLCENESCCELQTFQVRYFFQQLISGVSYCHDMEICHRDLKLENTLLEGKCLKICDFGYSKSYLIHSRANSMIGTPAYIAPEIFSDKEYDGKLADIWSCGVILYVMLVGSLPFDDPEDRCNLRKTIKRIMDVQYKIPDDVYISQGCRNLISRIFVADPKKRITMKEIKSHPWFLNNLPKELTEEAQTLHYRSKENSSSAQSIEDIMKIIYQAKTLPAPASSVNRAKTIPSTSGPILLEDFSLRCRISN. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06028 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Seca12g06028 340 Gene3D Transferase(Phosphotransferase) domain 1 80 273 - -
Seca12g06028 340 ProSiteProfiles Protein kinase domain profile. 4 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06028 340 SUPERFAMILY Protein kinase-like (PK-like) 1 319 IPR011009 -
Seca12g06028 340 SMART serkin_6 4 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06028 340 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Seca12g06028 340 PANTHER SERINE/THREONINE KINASE 2 292 - -
Seca12g06028 340 FunFam Serine/threonine-protein kinase SRK2A 80 273 - -
Seca12g06028 340 Pfam Protein kinase domain 4 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06028 Seca-Chr12 152133772 152140086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06028 4 265 CBL-interacting serine-threonine protein kinases AT1G01140 38.007 1.78e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca12g06028 Pkinase 6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06028 K14498 - vvi:100259302 422.165