Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06024 ATGGATGGTGACATTCCCCAAAAGTCTCCAAATAGGGATCAAGATTTCCAAAAGGAACCAATTTTCTTACATGGAGACTTGGATCTGTTGATAATAGAAGCTAAGTCTCTTCCAAATTTAGATTTATCTAGTGAAGCAGTTAGAAAATGTATGACTATGGGCAACATGTGCACACCTCCTTTTGTAAAAGGACTTAAAACACATTCTGGAAAAGATAAGATTATAACTAGTGACCCTTATGTCTCTGTCTGCCTGGCTGGGGCTACCATAGCTCAAACTAGAGTTATTCCTAATTGTGAGAACCCTTTGTGGGATGAGCATTTTGTTGTTCCTGTTGCTCACCCTGTTCAAAAAGTGGAGTTTCTTGTCAAGGATAATGATATTCTTGGGGCTGAACTTATTGGAGTAGTGGAGATACCTGTTCAAAAGTTACTGTCAGGAAACACTATAAATGATTGGTTTCCCATCATTGGTCAGTATGGAAACTGCTTAAAACCTTATCCTGAGTTGCATATTTCTGTTCAGTATAGGGCAATTGGAGCAAATTCTGGAAGTATCAGTGATGGAGATGGGACAACTTGTTTAGGGGTTCCTAAAACATATTTCCCTATCAGGAAAGGAGGGAGTGTGACTCTATATCAAGATGCACATGTACCAGATGGCATGCTACCTGAAATTCCACTTGAGGGTGGAAAACTATTTCAGCACAATAAATGTTGGGAGGATATATGCCATGCAATTTTGGAAGCTCACCACCTAATATATATTATAGGATGGTCAATTTTCCACCCAGTAAGGCTTGTCAGAGAACCAACAAAACCATTGCCTTCTGGGGGAGAGCTTTCACTTGGAGAGCTGTTGAAATACAAGTCACAAGAAGGGCTCCGAGTGGTTATGCTGATTTGGGATGACAAAACTTCACATGACAAGTTTCTTTTGAAAACAGATGGTGTCATGCAGACTCACGATGAAGAAACTAAAAAGTTTTTTAAACATTCCACAGTTCATTGTGTGCTATCTCCACGTTATGCAAGCAATAAACTCAGTATTTTCAAGCAACAGGTTGTGGGGACCCTCTTTACACATCACCAGAAATGTGTGCTTGTAGACACTCAAGCTTCTGGGAATAATCGGAAAATAACAGCTTTTATTGGTGGTCTTGATCTATGTGATGGCAGATATGATACACCTGAGCATCGGCTCTTTAGTGATCTAGAGTCAGTTTTTCACAAAGATTTTCATAATCCTACGTTTCAATTAAATTCGCTTGGACCAAGGCAGCCATGGCATGACTTACATTGCAAAGTTGAAGGTCCAGCTGCATATGATATATTGACCAATTTTGAACAGAGATGGAGGAAGGCCAAAAAATGGCGTGACTTCAGGCTAAAAAAGGTGACAAATTGGCATGATGATCCTTTGCTAAAGCTAGACCGTATTTCATGGATTGTCAATCCATCTTCTGGTCCCAATGGTGATAATATTGTCCATGTAACCGATGAAAATGATCCCGAGACTTGGCATAATCCAGTAAAGATTAAGAACAGGCATTTAATACAGGTATTTCGGTCCATAGATTCAGGATCTGTGAAGGGATTTCCAAAGGATATTGACAAAGCTAAGGCTCAGAATCTTTTATGTGGGAAAAATTTGAAAGTCGACCAAAGCATCCATACTGCTTATGTAAAAGCAATAAGATCAGCTAAGCACTTCATATATATTGAGAATCAGTATTTCCTGGGTTCCTCATATCATTGGCCTTCATATAAAAATGCAGGTGCAAATCACTTGATTCCCATGGAGTTGGCTTTAAAAATTGCCAGCAAGATCAATGCAAATGAACGTTTTCGTGTATATATAGTTATACCAATGTGGCCAGAGGGGGTTCCAACTAGTGCATCTGTTCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTTCAAGATTGTTGCAGATGCCCTTAATAAAGCAGGTCTCTCTGATCGGTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAGAGAGAACCTCAATCCCCAGAATGTCAGTCATCACAAAATCAATCATCTGCATCAGCCAAGAAATTCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGATGAATACGTAATCATTGGATCAGCAAATATTAACCAGAGATCATTGGATGGTTCAAGGGATACAGAAATAGCTATGGGTGCTTATCAACCAAAATATACATGGACAGAAAAGAAATCTCATCCACTTGGCCAGGTGTATGGATACCGGATGTCACTGTGGGCTGAGCACCTTGGTAGTCTTGATGGTATTTTTACTGAACCTCACACCTTGGAATGTGTTAGACATGTCAACAAGATTGCTAGACAAAACTGGGAAACATTTGTGGCTGAGGAATGGAATCAGATGAGGGGACACTTGTTGCAGTATCCAGTTTATGTCAGCAGGGATGGAAAAGTCAGTGCACTGAATGGTTGTGAGTGCTTTCCTGATGTTGGAGGCAAAATTCTTGGATCACCCAATTCACTTCCGGATGCACTAACTACTTGA 2577 0.3981 MDGDIPQKSPNRDQDFQKEPIFLHGDLDLLIIEAKSLPNLDLSSEAVRKCMTMGNMCTPPFVKGLKTHSGKDKIITSDPYVSVCLAGATIAQTRVIPNCENPLWDEHFVVPVAHPVQKVEFLVKDNDILGAELIGVVEIPVQKLLSGNTINDWFPIIGQYGNCLKPYPELHISVQYRAIGANSGSISDGDGTTCLGVPKTYFPIRKGGSVTLYQDAHVPDGMLPEIPLEGGKLFQHNKCWEDICHAILEAHHLIYIIGWSIFHPVRLVREPTKPLPSGGELSLGELLKYKSQEGLRVVMLIWDDKTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFSDLESVFHKDFHNPTFQLNSLGPRQPWHDLHCKVEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDPLLKLDRISWIVNPSSGPNGDNIVHVTDENDPETWHNPVKIKNRHLIQVFRSIDSGSVKGFPKDIDKAKAQNLLCGKNLKVDQSIHTAYVKAIRSAKHFIYIENQYFLGSSYHWPSYKNAGANHLIPMELALKIASKINANERFRVYIVIPMWPEGVPTSASVQEILFWQGQTMSMMFKIVADALNKAGLSDRYHPQDYLNFYCLGKREPQSPECQSSQNQSSASAKKFRRFMIYVHAKGMIVDDEYVIIGSANINQRSLDGSRDTEIAMGAYQPKYTWTEKKSHPLGQVYGYRMSLWAEHLGSLDGIFTEPHTLECVRHVNKIARQNWETFVAEEWNQMRGHLLQYPVYVSRDGKVSALNGCECFPDVGGKILGSPNSLPDALTT. 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06024 858 CDD C2_plant_PLD 20 177 - -
Seca12g06024 858 ProSiteProfiles C2 domain profile. 6 154 IPR000008 -
Seca12g06024 858 PIRSF PLD_plant 12 858 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Seca12g06024 858 FunFam Phospholipase D delta 230 472 - -
Seca12g06024 858 SMART pld_4 358 393 IPR001736 GO:0003824
Seca12g06024 858 SMART pld_4 704 731 IPR001736 GO:0003824
Seca12g06024 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 358 393 IPR001736 GO:0003824
Seca12g06024 858 Gene3D C2 domain 21 177 IPR035892 -
Seca12g06024 858 Pfam PLD-like domain 563 740 IPR025202 -
Seca12g06024 858 Gene3D Endonuclease Chain A 230 475 - -
Seca12g06024 858 SUPERFAMILY Phospholipase D/nuclease 198 461 - -
Seca12g06024 858 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 23 177 IPR035892 -
Seca12g06024 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 704 731 IPR001736 GO:0003824
Seca12g06024 858 Pfam Phospholipase D C terminal 780 848 IPR024632 -
Seca12g06024 858 Pfam C2 domain 25 156 IPR000008 -
Seca12g06024 858 Gene3D Endonuclease Chain A 520 755 - -
Seca12g06024 858 PANTHER PHOSPHOLIPASE D 21 847 IPR015679 -
Seca12g06024 858 SUPERFAMILY Phospholipase D/nuclease 555 775 - -
Seca12g06024 858 SMART C2_3c 26 153 IPR000008 -
Seca12g06024 858 Pfam Phospholipase D Active site motif 359 393 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06024 Seca-Chr12 152107918 152114670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06024 21 857 Phospholipase D Gene Family (Wang group) AT2G42010 54.014 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06024 K01115 - gmx:100779740 1522.68