Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06021 ATGGCTTCAAGAAAGGTCGATAACCCTCACTCTGGCGACGGTGCCAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGATACCACCTTAGACACTTTTGTGAAATACTTCGAGAAGTATGGAGAGATTACGGACTCCGTTATCATGAAGGACCGACACACGGGTCGACCCAGGGGATTCGGGTTCATCACTTACGCGGACCCTTCCGTCGTTGATGAAGTCATTCAGGAGAACCACATCATTAGCGGCAAGCAGGTACCGTCTTTAGGTGTTTTAATTTACTCTTACCAGGTTGAGATCAAGAGAACTATTCCGAAGGGTTCATCACAAGCCAATGATTTCAAAACAAAGAAAATTTTTGTCGGTGGTATTCCAACAGCAGTAACTGAAGATGAGCTCAAGAACTTCTTCTCTAAGTATGGGAAGGTCGTGGAACATGAGATAATACGTGACCACACCACAAAACGATCCCGGGGTTTTGGGTTTATAGTTTTTGACAGTGAGAAGGTTGTTGATAATATTTTGGCTGATGGGAACATGATTGATATGGCTGGTACACAGGTTGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACTCAACATCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACGTTCTTACGGTGATGGTTTTGGTGGATTTGGTGATTCGTATGGAGGTTTTGCTAGTGGTGGTTATGGCCCTGCATCTTATAGGTCACTTGGAGGTTTTGGAGGTAGGCTTGGTGATTATGGTGGATATGGAGGTGATGACTTCAATGGTAGTTTTGGGGGTTATGGTGGTGCTGGTGGCTATGCAGGCTATCGAGGAGAATCGTCTTTCGGCTACTCTAGTCGCTATGGATCCTACATGGGGGGTCTTGGTGGTGGATACGGTGGTGGGTTAGGAGCATATGGACGAGGTGGTGGAGGCTATGGAAGCTATGGTGGTCCAAGCACTGGTGAGGGTTATGAAGGCCCTGGTGCTGCTGGTTATGGTGGTGGGGCAGGAGGAGGGCTGTATGCTAGTAGGGGAAGTTATGGTGGAAATAGTCGTTACCACCCTTATGCAAGATAG 1086 0.4724 MASRKVDNPHSGDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDEVIQENHIISGKQVPSLGVLIYSYQVEIKRTIPKGSSQANDFKTKKIFVGGIPTAVTEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILADGNMIDMAGTQVEIKKAEPKKSSNSTSLPPFASDSRARSYGDGFGGFGDSYGGFASGGYGPASYRSLGGFGGRLGDYGGYGGDDFNGSFGGYGGAGGYAGYRGESSFGYSSRYGSYMGGLGGGYGGGLGAYGRGGGGYGSYGGPSTGEGYEGPGAAGYGGGAGGGLYASRGSYGGNSRYHPYAR. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06021 361 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 10 361 - -
Seca12g06021 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 79 IPR000504 GO:0003723
Seca12g06021 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 180 IPR000504 GO:0003723
Seca12g06021 361 SMART rrm1_1 19 91 IPR000504 GO:0003723
Seca12g06021 361 SMART rrm1_1 119 192 IPR000504 GO:0003723
Seca12g06021 361 Gene3D - 18 107 IPR012677 -
Seca12g06021 361 SUPERFAMILY RNA-binding domain, RBD 105 224 IPR035979 GO:0003676
Seca12g06021 361 SUPERFAMILY RNA-binding domain, RBD 12 85 IPR035979 GO:0003676
Seca12g06021 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 106 IPR000504 GO:0003723
Seca12g06021 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Seca12g06021 361 Gene3D - 108 230 IPR012677 -
Seca12g06021 361 FunFam Heterogeneous nuclear ribonucleoprotein 1 109 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06021 Seca-Chr12 152088663 152092100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06021 4 205 Eukaryotic Initiation Factors Gene Family AT1G71770 26.190 6.44e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06021 K12741 - gmx:100801373 390.963