Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06017 ATGGAGATTCACTACAGCCAAAGTTACTTCGAAAGGCGCCCCATTCTCAAGTCAAAGGCTCCCGCTGTTAAATGGGTTAAAAAATGGGTTCCCCAAGATCTCGTAACAACTGGGGGGAAGTGCATGCTCTTAAGATGGGTAACAGAGGATACCTTAAAGGCCTTGAAAGAAAAGGAAAAGGAGATACCAGTTCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCCCACATCCATGGAGAGAGGCAATATGTTTGTCACTATGAAGGATGTGGAAAGAAATTTCTAGACAGCTCAAAGTTGAAAAGGCATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTTATGAAGGCTGTGGTAAGGTCAATCTGCAGGCCTTCTCCCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACCCAGATTGCGGAAAGAGATTTGCGCATGAATACAAGCTAAAGAATCACATGGCATCTCATCATGAAAAGAATGCATCAGTTGAGGTGATCAAGTACACTCCACCTTCGGATAAGCAAACAAAAACTAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGATCGCCCCTATGCATGTCCTTATGAAGGATGTGAAAAAGCTTACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCATCCGGGGCATATGGCTGATGAAAATGCTGAGCATGCTCAGGTTAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTATGGTGGGAAATGGTCAAATGGTAAAACTCAGAAGCAAAGTAGGCCCAAACCAAACCTCAAGTTGCCTCATTCCAAAATTGCAAAACGCAAAGGGTCCACAGCCACTCTAACTGTAATTAACAAACCTTTGCCTGTGAAAGATGAAACCTTTGATGAAGAAGATAGCGAAGAAACAGAAGAAGATCGGAATAATGTTGAGGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGACGATGAAGAAACAGAATATGAAGACTGA 1122 0.4278 MEIHYSQSYFERRPILKSKAPAVKWVKKWVPQDLVTTGGKCMLLRWVTEDTLKALKEKEKEIPVPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPYEGCGKVNLQAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHMASHHEKNASVEVIKYTPPSDKQTKTKPSGGAYGSASSDRPYACPYEGCEKAYIHEYKLRLHLKREHPGHMADENAEHAQVNADNEMDEASDQDAYGGKWSNGKTQKQSRPKPNLKLPHSKIAKRKGSTATLTVINKPLPVKDETFDEEDSEETEEDRNNVEDGWRYAGGNNEDDDEETEYED. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06017 373 MobiDBLite consensus disorder prediction 288 303 - -
Seca12g06017 373 MobiDBLite consensus disorder prediction 207 229 - -
Seca12g06017 373 SMART c2h2final6 77 101 IPR013087 -
Seca12g06017 373 SMART c2h2final6 170 194 IPR013087 -
Seca12g06017 373 SMART c2h2final6 232 257 IPR013087 -
Seca12g06017 373 SMART c2h2final6 136 164 IPR013087 -
Seca12g06017 373 SMART c2h2final6 106 130 IPR013087 -
Seca12g06017 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Seca12g06017 373 MobiDBLite consensus disorder prediction 276 373 - -
Seca12g06017 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 262 IPR013087 -
Seca12g06017 373 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 312 - -
Seca12g06017 373 Gene3D Classic Zinc Finger 169 199 - -
Seca12g06017 373 Gene3D Classic Zinc Finger 103 134 - -
Seca12g06017 373 Gene3D Classic Zinc Finger 135 168 - -
Seca12g06017 373 FunFam Putative zinc finger protein 143 103 133 - -
Seca12g06017 373 ProSitePatterns Zinc finger C2H2 type domain signature. 234 257 IPR013087 -
Seca12g06017 373 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Seca12g06017 373 MobiDBLite consensus disorder prediction 207 223 - -
Seca12g06017 373 Pfam Zinc finger, C2H2 type 170 194 IPR013087 -
Seca12g06017 373 SUPERFAMILY beta-beta-alpha zinc fingers 78 102 IPR036236 -
Seca12g06017 373 ProSitePatterns Zinc finger C2H2 type domain signature. 172 195 IPR013087 -
Seca12g06017 373 SUPERFAMILY beta-beta-alpha zinc fingers 227 255 IPR036236 -
Seca12g06017 373 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Seca12g06017 373 Gene3D Classic Zinc Finger 205 275 - -
Seca12g06017 373 SUPERFAMILY beta-beta-alpha zinc fingers 150 196 IPR036236 -
Seca12g06017 373 FunFam zinc finger transcription factor YY1 77 102 - -
Seca12g06017 373 FunFam zinc finger transcription factor YY1 167 198 - -
Seca12g06017 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Seca12g06017 373 SUPERFAMILY beta-beta-alpha zinc fingers 101 143 IPR036236 -
Seca12g06017 373 FunFam Zinc finger transcription factor YY1 208 274 - -
Seca12g06017 373 Gene3D Classic Zinc Finger 77 102 - -
Seca12g06017 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 199 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06017 Seca-Chr12 152046468 152052083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06017 7 358 C2H2 Transcription Factor Family AT4G06634 66.033 4.12e-149 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g06017 zf-C2H2 0.0013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06017 - - gmx:100811480 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06017 12 152046468 152052083 Seca12g06017 12 152046468 152052083 ECH