Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06004 ATGGGTAACTGCTGGTGTAGGTGTAAATCATCAGATTATAGAGTGTCATCTAATGCAAAGTCAGAACAAAATCAGGAAATCAAACAAAGGAATGATGATAGAAAGTTACCATCCAATCCTGAAGAAGTAGAAGATCTACGGCGTGATTCAGCTGCAAATCCATTGATTGCATTCACTTATGAAGAGCTAAAGATAATCACTGGAAATTTTAGGCCAGATCGTGTGTTAGGTGGAGGGGGATTTGGAAGTGTTTATAAAGGTTTTATCTCTGAGGAGTTAAGGCAGGGTCTTCCTCCTCTTCCTGTAGCTGTTAAGGTTCATGATGGTGACAACAGTCATCAAGGCCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTCAAATTAATTGGATACTGCTGTGAAGATGAACATAGGGTGCTAATATATGAGTATATGGCCCGGGGAAGTGTGGAACACAATTTGTTCTCAAGTAAGTATATTATTATGCCCCTTTTTTGGTCTATAAGAATGAAGATTGCATTTGGCGCTGCAAAGGGACTTGCATTTCTTCATGAAGCAGAGAAACCTGTCATCTATCGTGATTTTAAGACCTCAAATATTTTATTGGACACGAAAGCACAATCTCTGCAAGGGCTATACAAAGTTTCCAAAATCACCCAGCTTTTAACTAATAATCATCTTGGTTTTTTATACATGTTACAAAAACAGGACTATAATGCAAAACTTTCTGACTTTGGCCTTGCCAAAGATGGACCAGTTGGAGACAAATCCCATGTTTCTACTCGAATAATGGGAACATATGGATATGCTGCACCTGAATACATAATGACAGGTCACTTGACCCCAAGAAGTGATGTTTACAGTTTTGGTGTTGTTCTTCTTGAACTTCTGACTGGAAGAAAATCTCTAGACAAGTTAAGACCTGCTAGAGAGCAGAACCTTGCAGAGTGGGCTCTTCCTTTGCTGAAGGAAAAGAAGAAATTGCTAAACATCATAGATCCAAGGCTGGAAGGTGATTATCCTGTAAAAGGAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACCGCAATCCAAAAGCAAGGCCTCTAATGAGAGACATTGTAGATTCATTGGAGCCTTTGATGGCATACAATGAGGTCTCAATTGAGAAAACATTTACCATAATCAGTGAGGTTCCTGAAGCTGATTTGAAAAAGAAAGATGCAAAAAAATGA 1248 0.3926 MGNCWCRCKSSDYRVSSNAKSEQNQEIKQRNDDRKLPSNPEEVEDLRRDSAANPLIAFTYEELKIITGNFRPDRVLGGGGFGSVYKGFISEELRQGLPPLPVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMARGSVEHNLFSSKYIIMPLFWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDTKAQSLQGLYKVSKITQLLTNNHLGFLYMLQKQDYNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLAEWALPLLKEKKKLLNIIDPRLEGDYPVKGVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLMAYNEVSIEKTFTIISEVPEADLKKKDAKK. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06004 415 ProSiteProfiles Protein kinase domain profile. 70 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06004 415 Gene3D Phosphorylase Kinase; domain 1 33 153 - -
Seca12g06004 415 MobiDBLite consensus disorder prediction 15 46 - -
Seca12g06004 415 MobiDBLite consensus disorder prediction 25 46 - -
Seca12g06004 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Seca12g06004 415 Pfam Protein tyrosine and serine/threonine kinase 73 382 IPR001245 GO:0004672|GO:0006468
Seca12g06004 415 FunFam Serine/threonine-protein kinase BIK1 37 153 - -
Seca12g06004 415 PANTHER OS01G0588500 PROTEIN-RELATED 29 385 - -
Seca12g06004 415 Gene3D Transferase(Phosphotransferase) domain 1 154 403 - -
Seca12g06004 415 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Seca12g06004 415 SUPERFAMILY Protein kinase-like (PK-like) 53 387 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06004 Seca-Chr12 151876633 151884747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06004 17 382 Glycoside Hydrolase AT3G07070 44.118 2.87e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca12g06004 PK_Tyr_Ser-Thr 2.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06004 - - gmx:100808795 652.899