Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05996 ATGGCACTTTCTGTTCACAGAGATTCATCAAACAAGCACATGGATTCTAGCAAGTATGTGAGGTACACACCCGAACAAGTGGAAGCTTTGGAGAGGGTATATGCAGAATGTCCAAAGCCTAGTTCTTCCAAAAGGCAACAGCTCATTAGGGAATGTCCCATCCTTGCTAATATTGAACCAAAACAGATCAAAGTGTGGTTTCAGAATCGCAGATGTAGAGAAAAGCAGCGCAAAGAATCAGTTCGTCTGCAGACAGTGAATAAAAAGCTGACTGCAATGAATAAGTTGCTAATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCACAGTTGGTTTATGAAAATGGATACATGAAACAACAAGTACAGACTGCATCTGCTACTACTACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGCACCAACAGCCAATCCCAAAAACTCAGCATCCCCAGTGGGATGCTAACAACCCAGCTGGTCTTCTCGCAATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCAACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTAGCTGTTTCCTGCAATTGTAGTGGGGTAGCAGCACGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACAAAGGTTGCCGAAATTCTTAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTATTGAGTATAGTCCCCACAGGGAATGGGGGCACAATAGAGCTCATGTACATGCAGACTTATGCACCAACAACACTGGCAGCAGCAAGAGACTTCTGGACACTAAGATACACAACAAGTTTGGAAGATGGAAGTCTTGTGATTTGCGAGAGATCCTTAACTTCTTCAAGTGGTGGCCCCACAGGGCCTTCTGCTTCAAACTTTGTAAGAGCTGAAATGCTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATTTAGATGTTTGGAGTGTTCCTGAGGTATTGAGGCCCCTCTATGAATCATCAAAATTCTTGACTCAGAAATTGACTATTGCTGCCTTGCGACACATAAGACAGATTGCACAAGAATCAAATGGAGAAGTTCATTATGGTGGGGGACGTCAGCCTGCTGTCTTGAGGACATTTAGTCAGAGACTTTGCAGAGGATTCAATGATGCTATCAATGGATTTGTGGATGATGGTTGGTCACTGATGGGTAATGATGGGGTGGAAGATGTGACCATAGCCATAAACTCATCTCCGGACAAGTTTTTTGGCTCCCATTACAACACGTCAATGCTCTCAACATTTGGAGGTGGGATCCTGTGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTCCTTTGCTTGTTCGATTTTTGAGGGAGCATCGTTCAGAGTGGGCTGATTATGGGGTTGATGCATACTCGGCTGCAAGTCTTAAGGCTAGTCCTTATGCAGTTCCTTTTACTAGACCTGTTGGCTTCCCCAGCAGCCAGGTCATTTTACCACTTGCTCAGACTGTTGAGCATGAGGAGCCCACTGCAATGATGCAGTTTCTGGAGGTAGTTCGTATAGAAGGTCATGCATTTTCACCTGAAGATGTGGCTTTGGCACGTGATATGTATCTACTGCAGCTGTGCAGTGGAGTTGATGAAAATGCAATTGGAGCATGTGCGCAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTGTCATACCATTGGATCCTAAAACAGGTGGTCCCACTGCGACTAGAACATTGGATTTGGCATCAACACTGGAAGTAGGATCTGGTAATGCTCGTCTAGCTGGTGAAGATGATTTGAATAACTACAACCTTAGGTCAGTCCTTACAATTGCATTCCAGTTTACCTTTGAGAACCATTTGCGAGACAATGTGGCTGCTATGGCTCGCCAATATGTGCGTAGTGTTGTGCGATCTGTTCAGAGGGTTGCCATGGCAATTTCTCCCTCTCCATTCACAACCCAGTTGGGGCCAAAATCACTTACCGGTCCACCAGAGGCTCTTACTTTAGCACGATGGATCTGTAGAAGCTACAGGGTCCACACTGGCACTGAGCTTTTTAGAATTGAGTCCACAGCTGGTGATGCAATCTTGAAGCAACTTTGGCACCATTTAGATGCAATAGTCTGCTGTTCTATAAAAGAATCTCCTGTGTTCAGCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTAGTTGCTCTTCAAGATATAATGCTCGATAAAGTTCTTGATGAAGCTGGCAGGAAGAATCTCTGCTTTGAATTCTCCAAGATAATGCAACAGGGATTTGCATCTCTGCCAGCAGGAATATGTGTGTCCAGTATGAATCGACCAGTGTCCTATGAGCAGGCCATTGCATGGAAAGTTCTGGATGACCATGATTCCAATCACTGCATGGCCTTCATGTTCATGAACTGGTCTTTTGTCTGA 2550 0.4533 MALSVHRDSSNKHMDSSKYVRYTPEQVEALERVYAECPKPSSSKRQQLIRECPILANIEPKQIKVWFQNRRCREKQRKESVRLQTVNKKLTAMNKLLMEENDRLQKQVSQLVYENGYMKQQVQTASATTTDNSCESVVMSGQHQQPIPKTQHPQWDANNPAGLLAIAEETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSCNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSIVPTGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSSGGPTGPSASNFVRAEMLPSGYLIRSCEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKFLTQKLTIAALRHIRQIAQESNGEVHYGGGRQPAVLRTFSQRLCRGFNDAINGFVDDGWSLMGNDGVEDVTIAINSSPDKFFGSHYNTSMLSTFGGGILCAKASMLLQNVPPPLLVRFLREHRSEWADYGVDAYSAASLKASPYAVPFTRPVGFPSSQVILPLAQTVEHEEPTAMMQFLEVVRIEGHAFSPEDVALARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKTGGPTATRTLDLASTLEVGSGNARLAGEDDLNNYNLRSVLTIAFQFTFENHLRDNVAAMARQYVRSVVRSVQRVAMAISPSPFTTQLGPKSLTGPPEALTLARWICRSYRVHTGTELFRIESTAGDAILKQLWHHLDAIVCCSIKESPVFSFANQAGLDMLETTLVALQDIMLDKVLDEAGRKNLCFEFSKIMQQGFASLPAGICVSSMNRPVSYEQAIAWKVLDDHDSNHCMAFMFMNWSFV. 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05996 849 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
Seca12g05996 849 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Seca12g05996 849 SMART START_1 165 375 IPR002913 GO:0008289
Seca12g05996 849 Pfam MEKHLA domain 706 848 IPR013978 -
Seca12g05996 849 CDD homeodomain 18 78 IPR001356 GO:0003677
Seca12g05996 849 Coils Coil 87 114 - -
Seca12g05996 849 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Seca12g05996 849 CDD bZIP 70 109 - -
Seca12g05996 849 Gene3D - 9 82 - -
Seca12g05996 849 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Seca12g05996 849 Pfam START domain 166 373 IPR002913 GO:0008289
Seca12g05996 849 Gene3D - 201 382 IPR023393 -
Seca12g05996 849 SMART HOX_1 15 81 IPR001356 GO:0003677
Seca12g05996 849 CDD START_ArGLABRA2_like 160 376 - -
Seca12g05996 849 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 14 849 IPR044830 GO:0003700
Seca12g05996 849 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Seca12g05996 849 SUPERFAMILY Bet v1-like 166 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05996 Seca-Chr12 151745907 151752662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05996 5 849 Homeobox Transcription Factor Family AT2G34710 76.146 0.0 1337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca12g05996 START 5.3e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05996 K09338 - gmx:100779499 1479.15