Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05994 ATGGTCCATCTTCAGTTAATGGGAATGCAGCAAGCCGGTGTTCCTCTTCCAACTGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAACAATATCATGGTATATTAAGACGTAGACAATCCCGTGCCAAAGCCGAATCAGAAAAAAAAGTTATAAGGAATAGAAAGCCATACTTGCATGAATCTCGACATTTGCATGCTCTGAGAAGAGCAAGAGGATGTGGCGGTCGGTTTCTGAATTCAAAGAAAAATGAGAATGAACATGGTGACGTGGCATCACCTGACAAATCACAGTCCACCATCAATCTCAACTCTGATAGAAATGATCTTACTTAA 336 0.4107 MVHLQLMGMQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEKKVIRNRKPYLHESRHLHALRRARGCGGRFLNSKKNENEHGDVASPDKSQSTINLNSDRNDLT. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05994 111 SMART cbf3 20 81 IPR001289 GO:0003700|GO:0006355
Seca12g05994 111 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 100 IPR001289 GO:0003700|GO:0006355
Seca12g05994 111 MobiDBLite consensus disorder prediction 39 55 - -
Seca12g05994 111 Gene3D - 21 82 - -
Seca12g05994 111 ProSitePatterns NF-YA/HAP2 subunit signature. 26 46 IPR018362 GO:0003677|GO:0016602
Seca12g05994 111 MobiDBLite consensus disorder prediction 75 111 - -
Seca12g05994 111 ProSiteProfiles NF-YA/HAP2 family profile. 21 81 IPR001289 GO:0003700|GO:0006355
Seca12g05994 111 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 23 78 IPR001289 GO:0003700|GO:0006355
Seca12g05994 111 PRINTS CCAAT-binding transcription factor subunit B signature 24 46 IPR001289 GO:0003700|GO:0006355
Seca12g05994 111 PRINTS CCAAT-binding transcription factor subunit B signature 55 78 IPR001289 GO:0003700|GO:0006355
Seca12g05994 111 MobiDBLite consensus disorder prediction 93 111 - -
Seca12g05994 111 MobiDBLite consensus disorder prediction 38 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05994 Seca-Chr12 151721211 151723600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05994 2 97 CCAAT-HAP2 Transcription Factor Family AT1G30500 77.083 4.06e-52 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca12g05994 CBFB_NFYA 1.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05994 K08064 - gmx:100499754 201.445