Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05993 ATGCAGGTCCATCTTCAGTTAATGGGAATGCAGCAAGCCGGTGTTCCTCTTCCAACTGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAACAATATCACGGTATATTAAGACGTAGACAATCTCGTGCCAAAGCTGAATCAGAAAATAAAGTTATAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCTCTGAGAAGAGCAAGAGGATGTGGCGGTCGGTTTCTGAATGCAAAGAAAAATGAGAATCAACATGGTGATGTGGCATCACCTGACAAATCACAGTCCACCATCAATCTCAACTCTGATAGAAATGATCTTACTTCATCAGATAGGACATCCTGA 357 0.4202 MQVHLQLMGMQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVIRNRKPYLHESRHLHALRRARGCGGRFLNAKKNENQHGDVASPDKSQSTINLNSDRNDLTSSDRTS. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05993 118 SMART cbf3 21 82 IPR001289 GO:0003700|GO:0006355
Seca12g05993 118 PRINTS CCAAT-binding transcription factor subunit B signature 56 79 IPR001289 GO:0003700|GO:0006355
Seca12g05993 118 PRINTS CCAAT-binding transcription factor subunit B signature 25 47 IPR001289 GO:0003700|GO:0006355
Seca12g05993 118 Gene3D - 22 83 - -
Seca12g05993 118 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 5 117 IPR001289 GO:0003700|GO:0006355
Seca12g05993 118 ProSitePatterns NF-YA/HAP2 subunit signature. 27 47 IPR018362 GO:0003677|GO:0016602
Seca12g05993 118 MobiDBLite consensus disorder prediction 79 118 - -
Seca12g05993 118 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 24 79 IPR001289 GO:0003700|GO:0006355
Seca12g05993 118 MobiDBLite consensus disorder prediction 92 112 - -
Seca12g05993 118 ProSiteProfiles NF-YA/HAP2 family profile. 22 82 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05993 Seca-Chr12 151709303 151710569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05993 3 118 CCAAT-HAP2 Transcription Factor Family AT1G30500 69.828 2.04e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca12g05993 CBFB_NFYA 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05993 K08064 - gmx:100499754 212.616