Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05989 ATGACGATGAATAATAGACGGTTGGAATTTGGGAGGCCTGTCTCAAGTAAAAGAAGATTGAAGGATATATTGGTTCAAAAGGATAATCGCTTTTGTGCTGATTGTGGTGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTATTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGTCTTGGTACTCATATATCAAGGATTTTGTCCGTGACATTGGATGAATGGTCAAGTGATGAAGTTGATGCAATGATTGAAGTTGGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATATTCCGGAAGGATATACAAAACCTGGATCTGATGCCAGTCATGAGCAGCGTGCAAAATTCATTCGGTCAAAGTATGAGCATCAAGAATTTTTGAAACCTAGTTTGCGCATTGTGTCTGGGAAAAGCAATAATCAATCAAGTCTTTCTAAAAGGAATAATGATAGTATCCGAAGTACTAATAGTTCGCAAAAAATGGAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGCACAGATTTAGCTATTAGAGATATGATGACTAGTGATCCGTATGTCATCTTGAAACTTGGCCAACAGACTGTTCAGACATCTGTAATAAAGAGTAACTTGAATCCAGTCTGGAATGAGGATCTTATGTTGTCTGTTCCTCAGCAATTTGGACTATTGAGTTTGGTAAGATTGAATTTTATCTTGTCTTTGTAA 741 0.3711 MTMNNRRLEFGRPVSSKRRLKDILVQKDNRFCADCGAPDPKWASANIGVIVCLKCCGVHRSLGTHISRILSVTLDEWSSDEVDAMIEVGGNASANSIYEAYIPEGYTKPGSDASHEQRAKFIRSKYEHQEFLKPSLRIVSGKSNNQSSLSKRNNDSIRSTNSSQKMEGMVEFIGMLKVKVIKGTDLAIRDMMTSDPYVILKLGQQTVQTSVIKSNLNPVWNEDLMLSVPQQFGLLSLVRLNFILSL. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05989 246 CDD ArfGap 20 126 - -
Seca12g05989 246 Gene3D C2 domain 156 239 IPR035892 -
Seca12g05989 246 MobiDBLite consensus disorder prediction 142 163 - -
Seca12g05989 246 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Seca12g05989 246 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Seca12g05989 246 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Seca12g05989 246 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Seca12g05989 246 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 12 237 IPR044518 GO:0005096|GO:0005543
Seca12g05989 246 ProSiteProfiles C2 domain profile. 152 246 IPR000008 -
Seca12g05989 246 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 169 231 IPR035892 -
Seca12g05989 246 SMART arf_gap_3 18 139 IPR001164 GO:0005096
Seca12g05989 246 SUPERFAMILY ArfGap/RecO-like zinc finger 17 134 IPR037278 -
Seca12g05989 246 Gene3D Arf GTPase activating protein 5 140 IPR038508 -
Seca12g05989 246 Pfam C2 domain 175 230 IPR000008 -
Seca12g05989 246 FunFam Arf-GAP with dual PH domain-containing protein 1 12 140 - -
Seca12g05989 246 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 131 IPR001164 GO:0005096
Seca12g05989 246 SMART C2_3c 175 246 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05989 Seca-Chr12 151678622 151684125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05989 10 242 C2H2 Transcription Factor Family AT4G21160 68.182 3.48e-125 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05989 K12486 - gmx:100777084 418.313