Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05987 ATGGGACAGCTTCCTTCCAAGGACATTTTAGCATTGCTTGAATTTAAGAAAGGCATCAAGCATGACCCCAATTCCTGGAATGAGGAATCCATTGACTTTGATGGATTCCCATCTTCATGGAATGGAATACTGTGTAATGGTGGTAATATTGCTGGGGTTGTCCTTGATAACCTGGGAAAACTTCCTAACAACATTGTTGACTTCAAAAGCCTTGAATTCCTGGATGTATCCAATAATTTCTTTTCTTCATCCTTACCAATGGGAATTGGTAAGTTAACTAGCTTGCAGAATCTGTTCTTGGCTGGAAACAACTTTTCTGGCCCAATTCCAGACTCTATTTCAGAAATGGCTTCAATCCAATCTTTGGACTTGAGCTGCAATTCATTTTCTGGAGCACTGCCAGCATCATTGACTAAGCTGACTAGTCTGGTATCACTTAATTTATCTCATAATGGCTTCACTGGAAAAATTCCCAAAGGTTTTGAGCTGATTTCTTCTCTTGAAAAGCTTGACTTGCATGGGAATATGCTTTATGGCGAGCAACCAGTTTTTGAATACTTGAATGTGTTGGACCTCAGTTACAATCAGTTATCTGGAGAATTGCCTGAATTTGATTTTGTTTATGAACTCCTTGTCCTCAAGCTTAGCAACAACATATTTTCAGGATTTGTTCCCAATGGCCTTCTTAAAGGAGACTCTTTGGTTTTATCTGAACTGGATTTGAGTAGCAACAATCTCTCAGGTCCACTAGGTATAATTACATCAACAACACTGCACTTTATTAATCTCTCATCAAATGAGTTCACTGATGAGCTTCCCTTGCTGACTGGAAGTTGTGCTGTAATTGATTTGTCAAATAACAAATTAGAAGGTAATTTAACCAGGATGGTGAAATGGGGGGATATTGAATTTCTTGATCTCAGTAGGAATCACTTGACAGGACCCATCCCTGAGGTTAGTGGTTATTTTCCTGTTGAGTTTGAGTCACTAACTGGCCTGAAAGTGCTTAATATTGCTGGAAATAATTTTTCTGGTTCTCTTCCAACTATCATTTCTGACATGAGTTCATTAGACTCCTTGGATATATCAGAGAACCATTTTATAGGTCCTTTACCAGTTAACATGCCTAAGGGGCTAAAAAAATTTAATGCTTCAAATAATGATCTATCTGGAGTTGTCCCAGGAAATCTTAGGAAGTTCCCCAGTTCTTCCTTCTATCCTGGGAATGCTAGGTTACATTTTCCAAATGGTCCACTTGAATCAACCAATAAGCCAGGTGAAAGTTCCAATAGGAAGCCTGTAAACACTATTGTTAAAGTAATAATCATAACGTCATGTGTGGTTGCTGCTCTCTTTATATTAATCCTGCTTGCTGTCATAGTACACTGCATCTGTATATCAAGGTCTCCACCAGAATATGCTACTAATAAGGACATCTATGAACATGCTCAACCACCCATCACTGGCCCTGGTCGTGCAAGAGACTCAAGTGGTGCTTTGGTTGTATCAGCTCAGGATCTTGTGACCTCACAAAAAGGATCATCATCAGAGATAATCAGCCATGATGAAAAAATGGCATCTGTAACTAAGTTCTCCCCATCAAAAAGTAGCCACATTTTATCATCTGACTCTGGTGATTCATTTCCTGGTGAAAATCATGCAAAACTACATGCAAGATCACCAAATGAGTTGATAGGAGAGCTGTATTTTCTTGATGATGCAATAACATTGACACCTGAGGAGCTCTCCAGAGCTCCAGCTGAAGTTTTAGGGAGAAGCAGTCATGGGACATCATACAAGGCCACTCTACAGAATGGTTTATTGTTGAGAGTTAAGTGGCTGAGAGAAGGAGTGGCAAAAGGGAGAAAAGAATTTACTAAAGAGGCTAAAAAATTTGCAAAAATCAGGCATCCCAATGTTGTGGGATTGAAGGGGTACTATTGGGGTCCTACACAGCATGAGAAACTTATTCTTTCAGATTACATCTCTCCAGGAAGTCTTGCAAATCAATCAGGAAGAAAAGGTCCACCATTGGCTTGGGTCCAGAGGCTTAAAATAGCAGTTGATGTAGCACGCGGCCTGAACTATCTCCATCTTGATCGTGCTATTCCTCATGGGAACCTCAAAGCAACAAATGTGTTGCTAGATACAGCTGACTTGAATGCACGTGTAGCTGATTACTGCCTCCACAGACTTATGACTCAGGCTGGTACCATTGAACAGATTCTACATGCTGGGGTCTTGGGTTATTGTGCACCAGAGTTGGCTACTTCCAAGAAGCCAATGCCCTCCTTCAAATCAGATATTTATGCTTTTGGGGTGATACTTTTGGAACTTTTAACTGGAAGGTGTGCTGGTGATGTTATATCTGGTGAGGAGGAAGTTGTTGATCTCACAAATTGGGTAAGGTTGCGTGTTGCACAAGGTAGAGGCTCAGAATGTTTTGATGCTGCATTGATGTCAGAAATGGGTAATTTAGTTGTAAAAAAGGGAATGAATGAGGTACTTGGAAGTTGGAATAGCTATTCAATGCATAAGATCTGTTTCTCAGAGGCCAGGCATCAAGACTATATATGA 2577 0.4024 MGQLPSKDILALLEFKKGIKHDPNSWNEESIDFDGFPSSWNGILCNGGNIAGVVLDNLGKLPNNIVDFKSLEFLDVSNNFFSSSLPMGIGKLTSLQNLFLAGNNFSGPIPDSISEMASIQSLDLSCNSFSGALPASLTKLTSLVSLNLSHNGFTGKIPKGFELISSLEKLDLHGNMLYGEQPVFEYLNVLDLSYNQLSGELPEFDFVYELLVLKLSNNIFSGFVPNGLLKGDSLVLSELDLSSNNLSGPLGIITSTTLHFINLSSNEFTDELPLLTGSCAVIDLSNNKLEGNLTRMVKWGDIEFLDLSRNHLTGPIPEVSGYFPVEFESLTGLKVLNIAGNNFSGSLPTIISDMSSLDSLDISENHFIGPLPVNMPKGLKKFNASNNDLSGVVPGNLRKFPSSSFYPGNARLHFPNGPLESTNKPGESSNRKPVNTIVKVIIITSCVVAALFILILLAVIVHCICISRSPPEYATNKDIYEHAQPPITGPGRARDSSGALVVSAQDLVTSQKGSSSEIISHDEKMASVTKFSPSKSSHILSSDSGDSFPGENHAKLHARSPNELIGELYFLDDAITLTPEELSRAPAEVLGRSSHGTSYKATLQNGLLLRVKWLREGVAKGRKEFTKEAKKFAKIRHPNVVGLKGYYWGPTQHEKLILSDYISPGSLANQSGRKGPPLAWVQRLKIAVDVARGLNYLHLDRAIPHGNLKATNVLLDTADLNARVADYCLHRLMTQAGTIEQILHAGVLGYCAPELATSKKPMPSFKSDIYAFGVILLELLTGRCAGDVISGEEEVVDLTNWVRLRVAQGRGSECFDAALMSEMGNLVVKKGMNEVLGSWNSYSMHKICFSEARHQDYI. 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05987 858 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 6 189 - -
Seca12g05987 858 SUPERFAMILY Protein kinase-like (PK-like) 587 803 IPR011009 -
Seca12g05987 858 SUPERFAMILY L domain-like 34 397 - -
Seca12g05987 858 Pfam Protein tyrosine and serine/threonine kinase 588 783 IPR001245 GO:0004672|GO:0006468
Seca12g05987 858 ProSiteProfiles Protein kinase domain profile. 584 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05987 858 Gene3D Ribonuclease Inhibitor 185 424 IPR032675 -
Seca12g05987 858 Pfam Leucine rich repeat 119 177 IPR001611 GO:0005515
Seca12g05987 858 PANTHER OS07G0626500 PROTEIN 319 836 - -
Seca12g05987 858 Gene3D Ribonuclease Inhibitor 5 184 IPR032675 -
Seca12g05987 858 Pfam Leucine rich repeat N-terminal domain 6 46 IPR013210 -
Seca12g05987 858 FunFam Leucine-rich repeat receptor-like protein kinase 569 661 - -
Seca12g05987 858 Gene3D Transferase(Phosphotransferase) domain 1 575 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05987 Seca-Chr12 151669504 151673112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05987 8 819 Receptor kinase-like Gene Family AT5G01890 28.738 5.39e-79 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g05987 PK_Tyr_Ser-Thr 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05987 - - egt:105948706 918.302