Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05982 ATGGATCCTCTGATATGGCGAGCAGCAAAAAATAAAGAGAAATTGTCATACAAAGAGGAAGCGTTGTGTTTGATTGGTCTAAGGAATTTTATCAGCCTCTTGTTGACTTACCCAGTCAAATTAGAAGAGGAAGGCATATTAAAGGCATGGATTAATGCATTTAACACTCAATGGAGACCCTTATTACTCACAACTGATGGTGTGAATGTGACAGACAAACCATGGCATGTACTGACTGGGAAGGCACTAAAATGTATGGAAGGGTTTATGCCAATGGAAATAATAAGTCAAATTGAACATAGTGGGAGGCCCATCTTCTACCACCATAATGATGTACCAAGAGCCATTCTCGATCTAACTGTTGATCTTGCAGTTGAGCAACTGATTCAAACTTTGTTTTCTAAAGATGATTATGCACGCTATGTGAGGCTCACAACCAGAGACAATGTTGAAAAAAAATGTGTGGTGAACAAAATAACAGCAGCCTTGGAAGAAGACAAGCACAACGGCCTGTTTGGAATTGATAAACATTTTCTTAGAGCCCTATGGATTGATGCCTCTTTGCATGAGAGTGATGCAGAGGTTCGAGTTCAACAACAAATCAATGCCATGATGGCACAAGATTTCGAGGAAGAGATGAAAAGCAACAGAAACAGATATTTGGTGATTCTGGTGGATGGTGATGGTAACAAAAGGCTAGACCCCACAAAAGTGCATTTCCCTGTCGGATCTGTGGTGTTGATAACAACTGAAACTGAACTATCAACACAGGCAGAGGAGGGTGATGATGATTTTACAATTACATGCACAATGGATTTGAATATCAGGACCCGGGATCATCTCTTGTCTTGGGAAGTCTTCTGTAGCTATGTGGGAAGTAACATGGTATGTTTAGCAAGGGACATTCAGAGAATTGCAGTGCAAATAGTAAAGGAATGTGATGGTCATCTTCTTTCCATTGTACTTGTGGCAAAGTCCCTGAAGAATGTGGAAGATGTTAAACAATGGGAACTTGCACTGGAGAAATTAAGCTACATGAATCCTTCCTATGATTACCAAGAGAGTGATCGAAGAGGCATTAGCAGAGCAATGGTCAATGCATTCATAAATATTGTCTGGGAAGGCATTGATGAGACACAAAAGCTTTTCCTTGAACTAAGTTTGTTTGTTCACAATATTAAAACTGGGGTGGCACGTGAGACCTTGATCTCCGATTGGGTTAGTGCTGATTTAGTACACAAACATGAAGTGGCACAACGTCTCTTCACATTTGATTCAGCTGATATTGAACTAGAATACATAAGAGAAGAAGCAGAATTTGACTTCACAAAGCTTCTAGTTTGTTCTATCTTACTGGAATGTGAAAGTGGTTATGTTCGTTTGCCGATAGAAACCTATGATATGATAGAATCCATACACAAAATGAATCCTAGCATCATAAGGGGTGGTGCTTTAGGATTGACAGAGCCACCCTACATTGGACAATGGCATGGTCTTATTCGAATTGAATTGATGGACAATGAAATATATGAGCTACCACATTCACCAGAATGCCCCAACCTCAAAGTGTTGTTGTTGCAACGCAATGCTGATTTGATGGATATTCCTGACTCATTTTTTGACCACATACCTCTGCTACAATACTTGGACTTATCTTACACTAGTATAAGGGATTTGCCCTCTTCTATCTCCAAGTTAATAGAGCTTAAGAAATTTTATCTTAGAGGTTGTGATCTTTTTATGGAACTACCACCAGAAATTGGACATCTGAAGAATCTTGAAGAGTTTGATCTTGATGGGACTTTGATCACACAATTGCCAGAGGAGATCCGAGAATTGATCAACCTGAAAAGTTTGACCCTCTGCTTTGATTTTGAAGGATACTATCATGCACTTGGTCATGGCAAAGAAGGCAAGCAAATTTCCAACTCAACAATTATTCCTCCAGGAGTGATATCAAATCTTACTCTACTGAATTATTTAAGCATCAATGTTGATCCTGAAGATGAGAGATGGAATGAGAACATTATTGGTATCTTGCCGGAAATTTTTGGATTAAAGAGGTTGAAAAGAGTCAGTTTATATGTCCCGAAGGCAGAATTTTTGGAACTTATACCACACCACAAATCCCTCGATTTTAGATTGGTTATTGGTCATCATATGCGTCGGTTCATTTCGCGTGTAACACTTGAAGTGGAGGAAAAATTCAAACAATGTGACCATAGTATAAAATTTGTGAATGGTGTAGATGTACCAAATGGAGTGACAATGAATCTTGAACGTTCAAGGGGTTTATACTTGGACAGACATGTGACCATCAAGAGTCTTTCTGAGTTCAAGTTGAAGAATTTATACATGTTGCGAGTATGCATATTGGCAGAATGTAATGAAATGGAAACAGTTGTTGATGAAAGTTATTCAGATGATGAGTATGTCCTTCGCAATTTGGAGTTTTTAAGTGTATTCTATATGAAGAATTTAAGAAGCATTTACAAAGGGAAGACTCCTCGATTGCATTGCTTGAAGACTATAGCATTGCACACTTGCCCCATGTTAACTACTGTGTTCACCTTAAGTTTGATCCCTAGTCTTTCTTCACTGGAGGAGCTTATTGTTGAAGATTGTCCAAAAGTAACCACCCTCATAAATCATGACTCATCAGAACATAAGACACCTGTTTACCTCCCTAGCTTGAGAAAGATTACATTACATTATCTTCCTGAATTGGTCAGCATTTTTAATGGCTTGCATGTTGGACCTGATTTAGAAAAAATAAGATTTTATTATTGCCCAAAACTCCAAACTCTTTCAAAATCAGACTTGTCAAGCAAATCATTGAGGGTCATTAAAGGAGAAAGAAGATGGTGGAAAGCTTTAAAGTGGAATGAAGCAGAGTGGGGATGTGCAACTCGACCCAAATTTCTCAATCTTATTTTTTTGCCGATTAATGAAGAGGCTGACATCATGACCCAAATAGCTTTTGATGACGATGAGGATCAGCTAGTATGCTCGTTTGAAAAGGCACTTGAAACAGTAAAGTGGGAAGGTCCCGCGGGCGAGCGATCACATTCACAGCAGTCCTCAGCGGTTACACCCCAGATGTCAGAGTTGACGTCTTTGAGCTTTGAACACTCTGGCACTGTCAGAGGTTTAGATTTGTGGAGCTTTGAGTTTGATCAGAGTCCTTCCAGAAAGAGAAAGCGAAAGATAGACACTTGGACAAAACTGATTCGGGTTTCATCACCCGGAATGGGAGTGGAGGAGGTTCCTCCTGATGATGGATATAGTTGGAGAAAATATGGCCAGAAAGATATTCTCGGAAGCAAATATCCAAGATCCTATTACAGATGCACTAACAAAATTGTATCTGGCTGCTTGGCCAAAAAGCAAGTGCAGAGATCTGAGGAGGACCCCACCATCTTGGAAATCACTTACAGAGAAGAGCACACCTGCAAAATGGACTCGAACATAAAAATTGAAGACCAATGCCCTGCTATATCAGGAATAAGTCACTTTTCGGTGTCTCCAAGTAGGGTGAACAGTTCTGTGTCTCAGATCAATATGATCCCAGCTGCTGCTTCAGCTCCAAACTCACCAATCGATGATTCAATGTTCAATTTGTTGGAGGACTTCCCAAATATGGAATAA 3648 0.3964 MDPLIWRAAKNKEKLSYKEEALCLIGLRNFISLLLTYPVKLEEEGILKAWINAFNTQWRPLLLTTDGVNVTDKPWHVLTGKALKCMEGFMPMEIISQIEHSGRPIFYHHNDVPRAILDLTVDLAVEQLIQTLFSKDDYARYVRLTTRDNVEKKCVVNKITAALEEDKHNGLFGIDKHFLRALWIDASLHESDAEVRVQQQINAMMAQDFEEEMKSNRNRYLVILVDGDGNKRLDPTKVHFPVGSVVLITTETELSTQAEEGDDDFTITCTMDLNIRTRDHLLSWEVFCSYVGSNMVCLARDIQRIAVQIVKECDGHLLSIVLVAKSLKNVEDVKQWELALEKLSYMNPSYDYQESDRRGISRAMVNAFINIVWEGIDETQKLFLELSLFVHNIKTGVARETLISDWVSADLVHKHEVAQRLFTFDSADIELEYIREEAEFDFTKLLVCSILLECESGYVRLPIETYDMIESIHKMNPSIIRGGALGLTEPPYIGQWHGLIRIELMDNEIYELPHSPECPNLKVLLLQRNADLMDIPDSFFDHIPLLQYLDLSYTSIRDLPSSISKLIELKKFYLRGCDLFMELPPEIGHLKNLEEFDLDGTLITQLPEEIRELINLKSLTLCFDFEGYYHALGHGKEGKQISNSTIIPPGVISNLTLLNYLSINVDPEDERWNENIIGILPEIFGLKRLKRVSLYVPKAEFLELIPHHKSLDFRLVIGHHMRRFISRVTLEVEEKFKQCDHSIKFVNGVDVPNGVTMNLERSRGLYLDRHVTIKSLSEFKLKNLYMLRVCILAECNEMETVVDESYSDDEYVLRNLEFLSVFYMKNLRSIYKGKTPRLHCLKTIALHTCPMLTTVFTLSLIPSLSSLEELIVEDCPKVTTLINHDSSEHKTPVYLPSLRKITLHYLPELVSIFNGLHVGPDLEKIRFYYCPKLQTLSKSDLSSKSLRVIKGERRWWKALKWNEAEWGCATRPKFLNLIFLPINEEADIMTQIAFDDDEDQLVCSFEKALETVKWEGPAGERSHSQQSSAVTPQMSELTSLSFEHSGTVRGLDLWSFEFDQSPSRKRKRKIDTWTKLIRVSSPGMGVEEVPPDDGYSWRKYGQKDILGSKYPRSYYRCTNKIVSGCLAKKQVQRSEEDPTILEITYREEHTCKMDSNIKIEDQCPAISGISHFSVSPSRVNSSVSQINMIPAAASAPNSPIDDSMFNLLEDFPNME. 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05982 1215 Gene3D Ribonuclease Inhibitor 465 720 IPR032675 -
Seca12g05982 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 347 IPR027417 -
Seca12g05982 1215 ProSiteProfiles WRKY domain profile. 1086 1154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05982 1215 Gene3D WRKY domain 1083 1154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g05982 1215 Gene3D - 280 356 IPR042197 -
Seca12g05982 1215 Pfam Leucine rich repeat 519 579 IPR001611 GO:0005515
Seca12g05982 1215 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 145 947 - -
Seca12g05982 1215 Gene3D Ribonuclease Inhibitor 750 957 IPR032675 -
Seca12g05982 1215 Pfam WRKY DNA -binding domain 1092 1152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05982 1215 Pfam NB-ARC domain 187 345 IPR002182 GO:0043531
Seca12g05982 1215 SUPERFAMILY WRKY DNA-binding domain 1087 1153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g05982 1215 SMART WRKY_cls 1091 1153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05982 1215 SUPERFAMILY L domain-like 487 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05982 Seca-Chr12 151624110 151640811 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05982 1063 1151 WRKY Transcription Factor Family AT4G11070 58.427 1.96e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g05982 NB-ARC 1.2e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05982 - - aprc:113857376 1249.19