Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05981 ATGAATAGTCCAAGAGATGGCAACATGGACAGTCTATCCAGTTCCCCTATAGTATTCTCTGACACTTTCAAATCCAAATTTGGGAGAAGTATGTTCCTAAAAAATGATGGATTGATGCATAATTCTTACTTCACTAGACTGGAACCTCAACAAGACACTGCAGATGGCTTAAAGGTGGAATGGGTAGAACAGAGTGAGCCAGGTGTTTACATCACACTTACAACCTTGCCAAGTGGAAAAAAAGGCCTTAAGCGAGTGAGATTTAGCCCGAAGCAGTTCTCGGAGAAGGAAGCTGAACAGTGGTGGAAAGAGAATCAAGATGCAGTGTACCGTAAGTATGAGATTGAAGCAGTGAATCATTGA 363 0.4187 MNSPRDGNMDSLSSSPIVFSDTFKSKFGRSMFLKNDGLMHNSYFTRLEPQQDTADGLKVEWVEQSEPGVYITLTTLPSGKKGLKRVRFSPKQFSEKEAEQWWKENQDAVYRKYEIEAVNH. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05981 120 Pfam Transcription factor regulating root and shoot growth via Pin3 59 113 IPR013591 -
Seca12g05981 120 ProSiteProfiles BRX domain profile. 59 114 IPR013591 -
Seca12g05981 120 PANTHER PROTEIN BREVIS RADIX-LIKE 1 54 113 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05981 Seca-Chr12 151617797 151618381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05981 55 119 Major Intrinsic Protein MIP AT1G31880 46.154 2.03e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05981 - - lja:Lj6g3v0391180.1 182.185