Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05979 ATGGATCCTCTGATGTGGCGAGCAGAAAAAGATGGAGAGAATTTGCCATACGAAGAGGAGGTGTTGCGTTTGATTGGTATAAGGGATTTTATCAGCCTCTTGTTGACTTATCCAGTCAAATTAGAAGAGGAAGGCATATTAAAAGCATGGATTAATGCATTTAAGACCCAATGGAGACCCCAATTACTCACAACTGATGATGTGAATGAGACAGACAAACCATGGCATGTACTGACTGTGAAGGCACTAAAATGTATGGAAGGGTTTATGCCAATGGAAATAATAAGTCAAATTGAACATAGTGGGAGGCCTATCTTCTACCGTCATAATGATGTACCAAGAGCCATTCTCGATTTAACTATTGATCTTGCAGTTGAGCAACTGATTCAAACTTTGTTTTCTATAGATGATTATGCATGCTATGTGAGGCTCACAACCAGAGACAGTGTTGAAAAAAGATGTGTGGTGAACAAAATAACAGCAGCCTTGGAAGAAGACAAGCACAACAGCCTGTTTGGAATTGATAAAGGTTTTCTTAGAGCCCTATGGATCGATGCCTCTGTACATGAGAGTGATGCAGAGGTTCGAGTTCAAGAACAAATCAATTCCATGATGGCACAGGATGTTGAGGAAGAGATGAAAAGCAACAGATATTTGGTGATTCTATTGGATAGAGATGGTAACAAAAGGTTGGACCCCACAAAAGTGCATTTCCCTGTGGGAACTGTGGTTTTGATAACAACTGAAACTGAACTATCAGCACAGGCACGGGAGGGTGATGATGAATTTGCAATTACATGCATAATGAATTTGAATATCACGACCCAGGATCATCTCTTGTCTTGGGAACTCTTCTGTAGCTATATGGTAAATAACATGGCACATTTATCAAGGGGCATTCAGAGCATTGCGGAGCAAATAGTAAAGGAATGTCATGGCCATCTTCTTGCCATTGTCCTTGTGGCAAAGTTTCTGAAGAATGTGTGGGATGTTAAACAATGGGAACTTGCGCTTGAAAAATTAAGGTTCACGAATCCTTCCTATGATTATCATGAGAGTGATCAAAGAGGCATTAACAGAGCAATGGTCAATGCATTCCTAAATATAATTTGGGAAGGCATCGAAAAGACACAAAATCTTTGCCTTGAACTCAGTTTGTTTGTTCACAATATTAAAACTGGGGTGTCACTTGAGACCTTGATGTCTAATTGGGTTAGTGTTGAATTATCACACAAACATGAAGTGGCACAACGTCTCTTCCCATTTGATTATGGTGATATTAGACTAAATTACACAATGGAAGAAGCATGCTATGACATCAATGTACTTATAGGTCATTCTATCTTGTTCGAAAGTGGAAGTGGTTATGTTCGTTTGCCGATAGAAACTTATGACATAATAGAATCCATACACAAATTGAATCCTAGCATCATAAGGGGTGGTGCATTAGGATTGACAGAGCCACCACATATTGGACGATGGCATGGTCTTATTCGAATTGAATTGATGGACAATGAAATATATGAGCTACCACAATCACCAGAATGCCCCAAGCTCAAAGTGTTGCTATTGCAACGAAATGCTGATTTGATGGATATTCCAACCTCATTTTTTGACCACATGCCTCTGCTCCAATACTTAGACTTATCCCACACCAGTATAAGGGATTTGCCCCCTTCTATCTCCAAGTTGAAAGAACTTAAGAAATTTTTTCTTAGAGGTTGTGATCTCTTTATGGAACTACCACTAGAAATTGGACATCTGAAGAATCTTGAAGAGCTTGATCTTGATGGGACTTTGATCACACATCTGCCAGAGGAGATCCGAGAATTGATCAACCTAAAAAGCTTGATCCTCTGCTTTGAAGGATATTATCATGCACTTGGTCATGGCAAAGAAGGCAAGCAAATTTCCAACTCAACAATTATTCCTCCAAAAGTGATATCAAATCTTACTCAACTGAATTATTTAAGCATCAATGTTGATCCTGATGATGAGAGATGGAATGAGGATGTGTTTAATATTTTGTTGGAAATCTTAGGATTAGAAAGGTTGAAGAGGGTAAGTATATATATCCCAAAGGTTGAATTTTTGGAAGTCATACCATCCCACACATCCCTTGATTTCAGATTGATTGTTGGTCATCATATGCGACGTTTCATATCACGTGTAACACCTCAAGTGGAGGAAAAGTTCAAACAATGTGACCGTAGTATAAAATTTGTGAATGGTGTAAATGTACCAAATGTAGTAAAAATGAATCTTTCATGTTTCAAGGCTTTATACTTGGACAGACATATGACCATCAAGAGTCTCTCTGAATTCCAGTTGAAGAATTTGTACACGCTGCGAGTATGCATATTGGGAGAATGTAATGAAATGGAGACAATTGTTGATGGGAGTTATTCAAATGATGAATGTGCCCTTCCAAATTTGGAGTTTTTGAGTGTATTCTATATGAAGAATTTAAGAAGCATTCGCAAAGGGACTCCTCCTCCTCAATTGCAATGCTTGAAGACTATAGCATTGCACACTTGCCCCATGTTAACTTCCATCTTTACCTTAGGTTTTATCTCCACTCTTTCCTTATTGGAGGAACTTATCATTGAAGACTGTCCAAAAGTGACCACCCTCATAAGTCATGACTCATCAGAATATGAGACGCCTATTTACCTCCCTAGCTTGAAAAAGATTACACTTGCCTATCTACCAGAACTGGTTAGCATTTTCAATGGCTTGCATGTTGAAAATGGCTTAAGAAAAGTGGGATTTTATTATTGCCCAAAACTCCAAAGTCTTTCAAAATCGGAGTTGTCAAGCAAATATCTGAGGGTCATCAAAGGAGAAAGTAAGTGGTGGGAAGCATTAAAATGGAATGAAGCAGAGTGGGGATGTGCAAATAGACCCGATTTTCTCAATCGAATTTTTTCCCCAGTCAATGAGGAGGCTGACATAATGACCCAACTAGCTACATATCACAATGATGACAAGCTTGTATCCTCGTTTGAAAATGCACTTGAAACGGTAAACTGGAATGAAGCAGCGGGTGAGCCATCACATTCACAACCGTCCTCAGGGATTACATTCCAAATGTCAGAGTTACTGTTTCATGAAGAGCCTGGTAGAGATTTAAGGGATGAGAAGCAGATTGTTTCCAGAAAGAATACAAACACTTTGCCAAAATGGACAGAACACATTCGGGTTTCACCACCAGGAATGGGAATGGAGGTTCCTCCCGATGATGGATATAGTTGGAGAAAATATGGCCAGAAAGACATTCTTGGAAGCAAGTATCCAAGAGGCTATTACAGATGCACCCACAGAAATCTATATGGCTGCTGGGCCAAAAAGCAAATGCAAAGATCTGATGAAGACCCCACAATCTTCAAAATCACTTACCAAGGAAAGCACACTTGCAATGTGGTGCTTCCTACATCAAGTCAACAAGAAGAAGAACAAGAATCAATTTTGAAAACACATTCTCAGCAGCAGGAGAAGAAGAATGTCCTGCAAAGCCTTGAGGAGCAACCAAACGACCAACCATTGAACCTCTGGGCAGGCCTGAAAGTCCAAACAGAGAACCCAGATTGTGTATATGATGAAAGATATTAG 3612 0.3945 MDPLMWRAEKDGENLPYEEEVLRLIGIRDFISLLLTYPVKLEEEGILKAWINAFKTQWRPQLLTTDDVNETDKPWHVLTVKALKCMEGFMPMEIISQIEHSGRPIFYRHNDVPRAILDLTIDLAVEQLIQTLFSIDDYACYVRLTTRDSVEKRCVVNKITAALEEDKHNSLFGIDKGFLRALWIDASVHESDAEVRVQEQINSMMAQDVEEEMKSNRYLVILLDRDGNKRLDPTKVHFPVGTVVLITTETELSAQAREGDDEFAITCIMNLNITTQDHLLSWELFCSYMVNNMAHLSRGIQSIAEQIVKECHGHLLAIVLVAKFLKNVWDVKQWELALEKLRFTNPSYDYHESDQRGINRAMVNAFLNIIWEGIEKTQNLCLELSLFVHNIKTGVSLETLMSNWVSVELSHKHEVAQRLFPFDYGDIRLNYTMEEACYDINVLIGHSILFESGSGYVRLPIETYDIIESIHKLNPSIIRGGALGLTEPPHIGRWHGLIRIELMDNEIYELPQSPECPKLKVLLLQRNADLMDIPTSFFDHMPLLQYLDLSHTSIRDLPPSISKLKELKKFFLRGCDLFMELPLEIGHLKNLEELDLDGTLITHLPEEIRELINLKSLILCFEGYYHALGHGKEGKQISNSTIIPPKVISNLTQLNYLSINVDPDDERWNEDVFNILLEILGLERLKRVSIYIPKVEFLEVIPSHTSLDFRLIVGHHMRRFISRVTPQVEEKFKQCDRSIKFVNGVNVPNVVKMNLSCFKALYLDRHMTIKSLSEFQLKNLYTLRVCILGECNEMETIVDGSYSNDECALPNLEFLSVFYMKNLRSIRKGTPPPQLQCLKTIALHTCPMLTSIFTLGFISTLSLLEELIIEDCPKVTTLISHDSSEYETPIYLPSLKKITLAYLPELVSIFNGLHVENGLRKVGFYYCPKLQSLSKSELSSKYLRVIKGESKWWEALKWNEAEWGCANRPDFLNRIFSPVNEEADIMTQLATYHNDDKLVSSFENALETVNWNEAAGEPSHSQPSSGITFQMSELLFHEEPGRDLRDEKQIVSRKNTNTLPKWTEHIRVSPPGMGMEVPPDDGYSWRKYGQKDILGSKYPRGYYRCTHRNLYGCWAKKQMQRSDEDPTIFKITYQGKHTCNVVLPTSSQQEEEQESILKTHSQQQEKKNVLQSLEEQPNDQPLNLWAGLKVQTENPDCVYDERY. 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05979 1203 Gene3D WRKY domain 1073 1142 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g05979 1203 SUPERFAMILY L domain-like 488 876 - -
Seca12g05979 1203 Gene3D Ribonuclease Inhibitor 746 951 IPR032675 -
Seca12g05979 1203 ProSiteProfiles WRKY domain profile. 1080 1142 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05979 1203 SMART LRR_typ_2 541 564 IPR003591 -
Seca12g05979 1203 SMART LRR_typ_2 588 611 IPR003591 -
Seca12g05979 1203 MobiDBLite consensus disorder prediction 1146 1174 - -
Seca12g05979 1203 SUPERFAMILY WRKY DNA-binding domain 1077 1140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g05979 1203 Pfam Leucine rich repeat 517 577 IPR001611 GO:0005515
Seca12g05979 1203 Gene3D - 278 354 IPR042197 -
Seca12g05979 1203 Gene3D Ribonuclease Inhibitor 463 716 IPR032675 -
Seca12g05979 1203 Pfam WRKY DNA -binding domain 1080 1140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05979 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 345 IPR027417 -
Seca12g05979 1203 FunFam WRKY transcription factor 53 1064 1142 - -
Seca12g05979 1203 SMART WRKY_cls 1079 1141 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05979 1203 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 152 943 - -
Seca12g05979 1203 Pfam NB-ARC domain 189 342 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05979 Seca-Chr12 151605578 151612428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05979 1043 1162 WRKY Transcription Factor Family AT4G11070 51.667 4.01e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g05979 NB-ARC 7.6e-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05979 - - aprc:113857376 1234.17