Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05960 ATGTCTATGACTCCATCCGAGAGCGAAACCAAGAAGAAGAAGCATCGCAGTCGCAAACATGAAGAAAATGAAGGACAAGAAGAAGCCAAGGAGCAGAAAGAGGACCTCTTCATGATCAAACCCCAGAAGTTTACAACCCCAATCGACACCTCCCAATGGCCCATTCTTCTCAAAAACTACGAGCGCCTCAACGTACGCACCGGACACTACACCCCTCTCCCCTCCGGTTACTCCCCTCTCAAACGCCCTCTCACTGAGTACCTCAAGTACGGTGTCCTCAACCTTGACAAGCCCGCTAACCCTTCTTCTCATGAGGTTGTCGCTTGGATCAAACGGATCCTCCGTGTCGAAAAAACCGGTCACAGCGGCACCCTCGACCCCAAAGTCACCGGAAACCTCATTGTCTGCATTGACAGAGCCACCCGCTTGGTCAAATCCCAACAGGGTGCTGGCAAAGAGTACGTTTGTATTGCTCGCTTGCACTCCTCTGTCCCTGATGTCTCCAAGGTCGCTCGCGCCCTCGAGACCCTCACTGGTGCTGTCTTTCAACGGCCACCGTTGATTTCCGCCGTCAAGCGCCAACTCAGGATCAGGACCATCTATGAAAGTAAGCTCCTTGAGTATGACCCTGATAAGCATTTAGTTGTTTTTTGGATTTCCTGTGAGGCTGGTACTTATGTTAGGACCATGTGTGTTCATTTGGGTTTGGTCCTTGGTGTGGGTGGTCACATGCAGGAACTTAGGAGAGTTAGGTCTGGGATTATGGGTGAGAAGGATAACATGGTTTCTATGCATGATGTTATGGATGCTCAGTGGGTTTATGATAATTACCGGGATGAGACTTATTTGAGGAGGGTTGTCATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGATTGGTTGTCAAGGATTCTGCTGTCAATGCCATTTGTTATGGTGCCAAGTTGATGATTCCTGGCTTGCTCAGGTTTGAGAATGATATTGAGGTAGGGGAGGAGGTTGTGCTTATGACCACCAAGGGTGAAGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTGATGGCAACTTGTGATCATGGTGTGGTGGCCAAGATCAAGAGGGTGGTCATGGATAGGGATACCTATCCCAGGAAATGGGGTTTGGGCCCCAGGGCTTCTATGAAGAAGAAAATGATTGCTGAAGGGAAGCTGGATAAGCATGGCAAGCCAAATGAGAAAACTCCCCAAGAGTGGCTGAGGAATCTGGTTTTGCCCACTGGTGGGGATAGCGTGATTGCAGGTATGGCTGCTGCGGATGAATCTGAAAAGGCCAAGAAAGAGACTGCTGTAAAAGAGGGTGAGAAGGATGCAGATGGGGAAGGGCGTAAAAGAAAGAAACACGAAAGTACTGATAGCCCTGTCTCCCTTCCTGCTAAGAAGGTGAAAGTTGATGAAGTTGAAGTGGTCGAGAAGCAGGAAACAGTGAAGCTGAAGAAAGTAAATGATGAAGCTGTGGAGGTTGTAGTTGAAAAGAAGGAGAAGAAGAAGGATAAAGAGAATGGTGAAGTGGCATCTTCAGATGAGGAGAAAGCTGAAAAGAAGAAGAAGAAGCACAAGGAAAAGGTTGAAGAGGGTTCTCCAGAGTTAGACAAATCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGACACTGAAGATAATGCTGCTGAAATTAGTAACGGAAAGGATGACAATAAAGCGGATAGGAGTGAAAAGAAGCATAAGAAAAAGAAAAACAAAGATGCCAAGGAAGAATAG 1782 0.4703 MSMTPSESETKKKKHRSRKHEENEGQEEAKEQKEDLFMIKPQKFTTPIDTSQWPILLKNYERLNVRTGHYTPLPSGYSPLKRPLTEYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDKHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKMIAEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGMAAADESEKAKKETAVKEGEKDADGEGRKRKKHESTDSPVSLPAKKVKVDEVEVVEKQETVKLKKVNDEAVEVVVEKKEKKKDKENGEVASSDEEKAEKKKKKHKEKVEEGSPELDKSEKKKKKKKDKDTEDNAAEISNGKDDNKADRSEKKHKKKKNKDAKEE. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05960 593 MobiDBLite consensus disorder prediction 433 593 - -
Seca12g05960 593 SMART pua_5 298 372 IPR002478 GO:0003723
Seca12g05960 593 Pfam DKCLD (NUC011) domain 50 107 IPR012960 -
Seca12g05960 593 SMART DKCLD_2 49 107 IPR012960 -
Seca12g05960 593 MobiDBLite consensus disorder prediction 1 32 - -
Seca12g05960 593 SUPERFAMILY Pseudouridine synthase 50 295 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Seca12g05960 593 ProSiteProfiles PUA domain profile. 297 372 - -
Seca12g05960 593 CDD PUA_Cbf5 296 370 - -
Seca12g05960 593 Pfam TruB family pseudouridylate synthase (N terminal domain) 111 227 IPR002501 GO:0006396
Seca12g05960 593 Coils Coil 573 593 - -
Seca12g05960 593 FunFam H/ACA ribonucleoprotein complex subunit CBF5 83 289 - -
Seca12g05960 593 NCBIfam uncharacterized domain 2 292 369 IPR004521 GO:0003723
Seca12g05960 593 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 11 536 IPR004802 GO:0006396
Seca12g05960 593 SUPERFAMILY PUA domain-like 297 378 IPR015947 -
Seca12g05960 593 Pfam PUA domain 298 370 IPR002478 GO:0003723
Seca12g05960 593 CDD PseudoU_synth_hDyskerin 89 271 - -
Seca12g05960 593 MobiDBLite consensus disorder prediction 434 578 - -
Seca12g05960 593 Coils Coil 504 524 - -
Seca12g05960 593 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 57 382 IPR004802 GO:0006396
Seca12g05960 593 Gene3D Pseudouridine synthase 83 289 - -
Seca12g05960 593 Gene3D PUA domain 50 381 IPR036974 GO:0003723
Seca12g05960 593 Pfam tRNA pseudouridylate synthase B C-terminal domain 228 294 IPR032819 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05960 Seca-Chr12 151435152 151436933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05960 17 477 NAC Transcription Factor Family AT3G57150 81.345 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05960 K11131 - gmx:100806355 878.626