Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05957 ATGCCTCGTAAAGTAAACTATGGACTCGATTACTATGACGACGACTATGACGACTATGATTACGAAGACTATGGAGAAGGACCCAATACAAAGCAAGAGACCACTAAGCCTGGACTTTGGCGATGCTCCATTTGCACTTATGACAACGATGAGAGTATGACTTCGTGCGATATTTGTGGTGTTTTACGTCATCCCTCGGTTTACATTGGAACTTCCTGCAATAACAAAACAGTTGAAGACATAAGCAAAACTCCTGGAGTATCCAAGTTGGCCAGGTCTCTTTTTCATTCATTTCCACAACAGATTCCCAAAGACGTTGTATTATTTCCAAAGCAGGGTGGTGGTTTTCAGACAGATGGCAGTAACTTCTACAAGCTTGAGAATGTCCAAGGAGAATTTCATGAAATTCATAAGGCTTTTAATACTCGAAGCCATCCCTATTTAAACATAGATGCTTTTAAGTTTGACGTTCCATCCCCAGATGATGTGGTTTATTCTGGCTTACATTCTTCCAAAATGGGTTTGAAAGGTATCCCTCCTTTATTAACCATTTTTTCCATCTACAAAGTTACAAACTCTAAAACTTCTCGGCTTTCATCAAGCATCAAAGAGAAGAACGATTTTTCTATACAATCAAATGCTGAAAGTTCAGACATATCATCCTTAGTGCGAAAGAGCGGCAAGCTTTCCAAAAATGTAGAAAGTAATCTGGAAACAGTTGGTAAAACTTCAAACAGCTTACCGGCATCTTTGTCAAAGGACAGAGGTGACAATATGAATAAAATAAATTCTTCTGAAAGTGGTACAATTGATGTTCAATCAAGTAAAGAAAAGTCAGGTAGTTTGTCTTCATTGCCAAAAGTCAAAGAAAGTGATGAGATTAGTTCCTCTTCTATCAAAGATGGAAAACCTGAAAGTGTTTCTAGCAGTTTTAACAACATGCATCTTAATGTAAGATCTGGAAATTCTGATAGTACTAATGCTAAGGGACCTTGTTCACAAGTTTCTTATAAGCCAGAAAAATGGATGCTCCCTCAACATGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGTCATGTTGATTCTGGAAAATCAACACTGTCCGGTAGGTTATTACACCTATCAGGACGAATTTCCCAGAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCCTTTGCATATGCTTGGGCACTTGATGAAAGTTCAGAAGAAAGGGAAAGGGGAATAACTATGACTGTTGCTGTTGCATATTTTGACACTAGGAAATATCATGTAGTTGTGCTTGACTCCCCGGGCCATAAAGATTTCGTCCCAAACATGATTTCTGGGGCAACTCAAGCTGATGCTGCAGTTCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGTAGCAAAGGACAAACGAGGGAACATGCACAACTTATTAGAAGCTTTGGTGTTGACCAGGTTATAGTTGCAGTAAATAAGATGGATGTTGTGGCATACTCCAAAGATCGATTTGATTTTATAAGACAGCAGTTAGGAATTTTTCTCCGCTCATGTGGATTCAAAGATTCATCTATAAAATGGATTCCCATGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATATTCGTTTCAAAAACTGGTATAGTGGACCTTATCTGTTAGATGCAATTGACTCACTCCAACCTCCTACTAGAGAATTCTCAAAACCTCTACTAATGCCGATATGTGATGTTATCAAATCAACTACACTAGGACAGGTGTCGGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTAGTTATGCCTTCAGCTGTTGTGGGAACAGTACGCTCATTGGAGCGTGACTCTAATGCCTGCACTGTTGCAAGAGCTGGAGATAACGTAGCTGTGACGTTGCATGGTGTTGATGGAAGTCTTGTAATGGCAGGAGGTGTACTATGCCATCCTGACTTTCCTATTGCAGTTTCAAAGCATTTGGAGTTGAAAGTGCTTGTCTTGGATGGTGCGAGTCCCATATTGGTGGGCGCTCAGTTAGAGTTTCATATACACCATGCAAAGGAACCTGCTAGAGTTTCAAGAATAGTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCCCCTCGTTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGATTTTGCAAGAGCCAGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTCAGATCATTTGGAAGAACAATCGCTGTTGGACTTGTGTCAAGAATAATTGAAGAGTAA 2346 0.4049 MPRKVNYGLDYYDDDYDDYDYEDYGEGPNTKQETTKPGLWRCSICTYDNDESMTSCDICGVLRHPSVYIGTSCNNKTVEDISKTPGVSKLARSLFHSFPQQIPKDVVLFPKQGGGFQTDGSNFYKLENVQGEFHEIHKAFNTRSHPYLNIDAFKFDVPSPDDVVYSGLHSSKMGLKGIPPLLTIFSIYKVTNSKTSRLSSSIKEKNDFSIQSNAESSDISSLVRKSGKLSKNVESNLETVGKTSNSLPASLSKDRGDNMNKINSSESGTIDVQSSKEKSGSLSSLPKVKESDEISSSSIKDGKPESVSSSFNNMHLNVRSGNSDSTNAKGPCSQVSYKPEKWMLPQHAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLSGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTRKYHVVVLDSPGHKDFVPNMISGATQADAAVLVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDQVIVAVNKMDVVAYSKDRFDFIRQQLGIFLRSCGFKDSSIKWIPMSAMENQNLVASPSDIRFKNWYSGPYLLDAIDSLQPPTREFSKPLLMPICDVIKSTTLGQVSACGKLEAGALRSGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVTLHGVDGSLVMAGGVLCHPDFPIAVSKHLELKVLVLDGASPILVGAQLEFHIHHAKEPARVSRIVSVLDPKTGKVTKKSPRCLTAKQSAVIEVILQEPVCVVEFSSCKALGRVSLRSFGRTIAVGLVSRIIEE. 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05957 781 MobiDBLite consensus disorder prediction 234 292 - -
Seca12g05957 781 FunFam elongation factor 1-alpha isoform X4 673 781 - -
Seca12g05957 781 ProSiteProfiles Zinc finger RanBP2 type profile. 36 65 IPR001876 -
Seca12g05957 781 Pfam Elongation factor Tu C-terminal domain 671 778 IPR004160 -
Seca12g05957 781 FunFam Translation elongation factor EF-1 579 669 - -
Seca12g05957 781 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 352 583 IPR000795 GO:0003924|GO:0005525
Seca12g05957 781 SUPERFAMILY Ran binding protein zinc finger-like 37 63 IPR036443 -
Seca12g05957 781 PANTHER TRANSLATION FACTOR 351 778 - -
Seca12g05957 781 SMART zf_4 38 62 IPR001876 -
Seca12g05957 781 MobiDBLite consensus disorder prediction 234 332 - -
Seca12g05957 781 Pfam Elongation factor Tu GTP binding domain 355 571 IPR000795 GO:0003924|GO:0005525
Seca12g05957 781 Gene3D - 30 68 - -
Seca12g05957 781 PRINTS GTP-binding elongation factor signature 415 423 IPR000795 GO:0003924|GO:0005525
Seca12g05957 781 PRINTS GTP-binding elongation factor signature 435 445 IPR000795 GO:0003924|GO:0005525
Seca12g05957 781 PRINTS GTP-binding elongation factor signature 356 369 IPR000795 GO:0003924|GO:0005525
Seca12g05957 781 PRINTS GTP-binding elongation factor signature 496 505 IPR000795 GO:0003924|GO:0005525
Seca12g05957 781 PRINTS GTP-binding elongation factor signature 451 462 IPR000795 GO:0003924|GO:0005525
Seca12g05957 781 Gene3D Translation factors 673 781 - -
Seca12g05957 781 FunFam Elongation factor 1 alpha-like protein 345 576 - -
Seca12g05957 781 CDD HBS1_C_III 670 778 - -
Seca12g05957 781 Gene3D - 343 576 IPR027417 -
Seca12g05957 781 SUPERFAMILY Translation proteins 574 669 IPR009000 -
Seca12g05957 781 ProSitePatterns Zinc finger RanBP2-type signature. 40 59 IPR001876 -
Seca12g05957 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 597 IPR027417 -
Seca12g05957 781 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 675 779 IPR009001 -
Seca12g05957 781 Gene3D Translation factors 580 669 - -
Seca12g05957 781 CDD EF1_alpha 356 575 - -
Seca12g05957 781 MobiDBLite consensus disorder prediction 300 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05957 Seca-Chr12 151400901 151411105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05957 149 781 Eukaryotic Initiation Factors Gene Family AT5G10630 60.630 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05957 K14416 - gmx:100801724 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04633 6 113839022 113841459 Seca12g05957 12 151400901 151411105 PCT