Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05956 ATGGGAATTCAGGGTCTATTACCGCAATTGAAATCGATCATGGTTCCATTTCACATCAAGGATTTGAATGGCTGTTCTGTGGCGGTAGACACTTATTCTTGGCTCCACAAAGGTGCCTTGTCTTGCAGCACTGAGCTCTGCAAAGGGATGCCCACTTCCAGGCACATTGAGTATTGCATGCACAGAGTAAATTTGCTGCGCCACTATGGTGTTAAGCCCATTCTTGTATTTGATGGAGGTCTTCTACCGATGAAGAGTGAACAAGAGAACAAGCGTGCCAGGGTTAGAAAGGATAATTTTGCACGTGCAGTTGAGCATGAGTCAGATGGAAATTCTGCGGCTGCATATGAGTGCTACCAGAAAGCTGTTGATATTTCACCTCTGATTGCACGTGAACTAATTCAGGTATTAAAGCAGGAGAATGTGCAGTACATTGTTGCTCCTTACGAGGCAGATGCCCAGATGACATTCTTGGCAATTAGCAGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTATTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTCAAAAAGGCCCATGCAAGCATTAAAAGATTTAAAAGTTATGACAAGGTTCTTAAGCACTTGAGATACAATGGAGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAGGAAGGCTATTCTTACTTTCCAATACCAACGGGTTTATGATCCAATTAATGAAAATATTGTCCATTTGTCTAATATACCTGATGATATTGGTGACGAGTTAGACTTTTTGGGCCCACCCATGCCAAAAGATATAGCACAAGGAATAGCAAAAGGGGATATTGATCCATTTACCAAAATGCCATTTGAGGGAGAGAATCTTATTCCCAGATTGGCAATTGCAGGCACTTGTCAATTCAAAACCATTCATTCTGAAAGTGTGAAGAAAAAAATTGATTTGCCCGTGCAGAAGAATCTCTTGACCAAGTATTTTTGTTTTGCATCTCTTGAAGCAAAAAGGAAATTCAGAGCTCCTCGGATATCACCTACTACTACCAATCAAAGTACATTGGATTCCTCTTCTGTCAGTTCCCTTGAACATGAGACTTTAGAAGCTGCTGCCAGTGAAACAAAGAATTCAGCTGCATCCATAGTTGACTCTGAGAATTGGTGCAGTGGCCCTCTTCCTAATAACCATATTGAAAACAGTTTTACCACCAAAGTTTCCGAGTTTATGCAATCTCCATGTCATGTATCTATGGTGGGTGAAAAGAAGAAAAGTCCTGAACATACAATACTGCGACAACCCAGGCAGCCAATTCATAAACCTTGTCTAGGGTTGCTTAAGGAGCATGAGCTCACAAATGTCCAAGACACAGTTGAAGGAAAAACCAGGGAGGCAACAAAAAAGGTAATTGTAAGGAGTGCTTATTTTCAGCATAAGCAAGTAGAGAAGAATGTTTGTGGTGAGAAACAAGATTGCCTGTCCTCTGGCATTGTCATTGATGAGAGAAAAAATGCCATATCTGACAGTGATTTATGTAACAACCATTTGAAGAATAAAGACTTGAAAAGGAAGATCTCCCCTAATGACCACATCCAGAGCGAAAATTTGCGGCCCAGGCTAATACGTCCTGCTTCACCTCCTCATAATAATGGTTTCTGTGATGACAATGTTACTGGACCATTTGCAGAGAATAATGCTGAAGAAAAATTTGGGACAAATATTTCCCATCTAGGCCATTATTCGAAAATAGCTGAGAAGTCTTTGGAAAGATTTGAATCTGTGATATCATCCTTTAGATGCTCTTCTGGCTCTCGTGTCAGTGGTCTCCGTGCTCCTCTGAAAGATGTTCGGAACATTTGTAATAATAGGCCTAAAACTGTGGACTTCAAGCAATATGCGTATGTGCCAAAACAAACAAAGACTAGCAGAACAGCTCCTGGGAATTAA 2085 0.4067 MGIQGLLPQLKSIMVPFHIKDLNGCSVAVDTYSWLHKGALSCSTELCKGMPTSRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKSEQENKRARVRKDNFARAVEHESDGNSAAAYECYQKAVDISPLIARELIQVLKQENVQYIVAPYEADAQMTFLAISRQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLPGMGLKKAHASIKRFKSYDKVLKHLRYNGVSVPPFYEESFRKAILTFQYQRVYDPINENIVHLSNIPDDIGDELDFLGPPMPKDIAQGIAKGDIDPFTKMPFEGENLIPRLAIAGTCQFKTIHSESVKKKIDLPVQKNLLTKYFCFASLEAKRKFRAPRISPTTTNQSTLDSSSVSSLEHETLEAAASETKNSAASIVDSENWCSGPLPNNHIENSFTTKVSEFMQSPCHVSMVGEKKKSPEHTILRQPRQPIHKPCLGLLKEHELTNVQDTVEGKTREATKKVIVRSAYFQHKQVEKNVCGEKQDCLSSGIVIDERKNAISDSDLCNNHLKNKDLKRKISPNDHIQSENLRPRLIRPASPPHNNGFCDDNVTGPFAENNAEEKFGTNISHLGHYSKIAEKSLERFESVISSFRCSSGSRVSGLRAPLKDVRNICNNRPKTVDFKQYAYVPKQTKTSRTAPGN. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05956 694 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Seca12g05956 694 MobiDBLite consensus disorder prediction 391 412 - -
Seca12g05956 694 SMART xpgineu 138 208 IPR006086 GO:0004518
Seca12g05956 694 Gene3D - 209 281 - -
Seca12g05956 694 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Seca12g05956 694 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 426 IPR006084 -
Seca12g05956 694 FunFam Exonuclease 1, putative 1 207 - -
Seca12g05956 694 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Seca12g05956 694 SMART xpgn3 1 99 IPR006085 GO:0004518
Seca12g05956 694 Gene3D - 1 207 - -
Seca12g05956 694 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Seca12g05956 694 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Seca12g05956 694 FunFam exonuclease 1 209 281 - -
Seca12g05956 694 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Seca12g05956 694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Seca12g05956 694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Seca12g05956 694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Seca12g05956 694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Seca12g05956 694 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Seca12g05956 694 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Seca12g05956 694 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05956 Seca-Chr12 151382472 151389017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05956 1 264 Core DNA Replication Machinery Family AT5G26680 25.993 2.93e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05956 K10746 - gmx:100798062 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05956 12 151382472 151389017 Seca12g05956 12 151382472 151389017 ECH