Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05955 ATGCCAGGGAACAATTATAACTGCACTCCTTTAACCCCAAGATCAAGATTGGAAAGGCTTTTGAGGGAAAGAGAGCTAAGGAAATCCTTCAGGTATTCTCAATCAAACGAGGAGGGAAGAGATGGCAACAAAGAAGGAGAACAATTTTGTAGTGATTCATTCATAAGTGAGAGTGAAAATTCAGGTGTTCATAATGAGGAAGAGGTCACGGAAACCGTTGCGGATGCAAGTGTTTTTACAGAGAGAAGTCAAAGACAAGATGAGAGGCCACGCAAGCAACGGTTGTTGGTGGTAGCTAACAGGTTGCCTGTCTCAGCTGTTAGGGAGGGTGTGGACTCATATCACCTTGAGATCAGTGTTGGTGGGCTTGTCAGTGCACTTTTAGGTGTAAAGGAGTTTGACACCAGATGGATTGGGTGGGCTGGTGTGAATGTGCCCGATGAAGTTGGGCAGGAAGCATTAACAAAAGCTTTAGCTGAAATGCGATGCATCCCAGTATTTCTTGATGAGGGGATAGTTAATCAGTACTATAATGGTTATTGTAACAACATCTTATGGCCTCTATTTCATTACCTTGGGCTTCCACAAGAAGATCGACTTGCCACCACCCGGAGTTTCCAATCTCAATTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTAGTAAATAAGCATTATGAGGAGGGAGATGTTGTTTGGTGCCACGATTACCACCTAATGTTCCTTCCAAAATGTTTGAAAGAGTACAATGACAAAATGAAAGTTGGCTGGTTTCTCCATACACCTTTTCCTTCCTCAGAGATACATAGGACTTTACCATCCAGATCAGAGCTGTTGAGATCTGTACTTGCGGCTGACCTGGTGGGATTCCATACTTACGATTATGCAAGGCATTTTGTTAGTGCTTGTACCCGTATTCTTGGCCTTGAGGGTACACCTGAAGGAGTAGAAGATCAAGGGAAGCTAACCCGTGTGGCTGCGTTTCCTATTGGGATTGATTCAGAAAGATTTATTCGAGCCCTTGAGCTCCCTGAAGTCCAGAATCACATGAAAGAACTGAAAGAAAGATTTGCAGGCCGAAAGGTAATGTTGGGTGTTGATCGTCTTGATATGATAAAAGGAATTCCCCAGAAAACCTTGGCATTTGAAAAGTTCCTCGAGGAGAATTCACATTGGCGTGATAAAGTCGTCTTGCTGCAAATTGCTGTACCTACAAGGACAGATGTTCCCGAATATCAAAAACTTACAAGCCAGGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACTGCTGTCCCAATACACCATCTGGATCGGTCACTTGACTTTCATGCATTATGTGCACTCTATGCTGTTACTGATGTAGCGCTTGTTACATCTTTAAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCGTGTCAAGCTTCCAAGAAGGGGGTTCTCATTTTAAGTGAGTTTGCAGGTGCGGCACAGTCTCTTGGTGCAGGTGCTCTCTTGGTAAATCCATGGAACATCACCGAGGTAGCTGCTTCTATTGGTTATGCCTTGGATATGCCAGCTGATGAGAGAGAGAAACGGCATCAGTTTAATTTCAAGCACGTCACAACTCACACATCACAAGAATGGGCTGCAACTTTTGTGAGTGAACTGAATGATACCATTGTTGAAGCCCAGCTTAGGACAAGACAAGTTCCTCCATTACTTCCTAACAAAGTGTCTGTTGATTGTTACTCAAAATCCAATAACCGATTAATTATACTGGGTTTCAATGCCACTTTGACTGAGCCAGCGGATGCCCTTGGAAGGGGTGGTGGTCAAATTAGAGAACTGGAACTTAAATTACACCCAAGTGTGAAGGAATCTTTAAAGAAGTTATCTGACGATCCAAAGACAACAATAGTTGTTCTGAGTGGGAGTGATCGAGCTGTCTTGGACAAAAACTTCAGTGAATATAATATGTGGTTGGCAGCAGAAAATGGGATGTTTTTGCGGCTTACTTCAAGTGAATGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGCGTAAAGCATGTTTTTGAGTATTTTACTGAAAGAACCCCACGGTCTCATTTTGAGGTTCGGGAGACTTCAATAGTATGGAATTACAAGTATGCAGATGTTGAGTTTGGAAGGATTCAAGCAAGAGATCTGCTTCAACATCTTTGGACAGGGCCAATATCCAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCTGTGGAGGTCCGGGCAGTTGGTGTGTCAAAGGGAGCAGCTATTGATCGTATCCTGGGAGAGATAGTTCATAACAAAGGCATGAACGCACCGATTGATTACGTCCTATGCATTGGGCATTTTCTAACAAAGGTGGATGAAGATGTCTATAAATTTTTTGAGCCAGAGCTCCCTACTGAATCATCTCCAGTGCCAACAGCTATGCTATCCAAATCCAATTCATACAGGCCATCATCTCTGCCAAAATTTTCAGCCAGCAAAAGTGGGTCAAAAACTTCTCGCTATAAACGCTCATTGTCAACAATAGAAAGGAGAGAAATTGATCGTGCAAGTGGTGATCCTTGGAGATCAACATATGGTGATAGAATATCATTACATGAGGGTTCTTCAGTGCTTGATCTTAAAGGTGATCATTACTTCTCTTGTGCTGTTGGGCGAAAGAGATCAAGTGCTCGCTACCTACTTAAAACCTCAGATGATGTTGTCAATCTCTTAGGCGAGCTGGTGGAACATTCTTCATCACCATCAACTTAG 2805 0.4275 MPGNNYNCTPLTPRSRLERLLRERELRKSFRYSQSNEEGRDGNKEGEQFCSDSFISESENSGVHNEEEVTETVADASVFTERSQRQDERPRKQRLLVVANRLPVSAVREGVDSYHLEISVGGLVSALLGVKEFDTRWIGWAGVNVPDEVGQEALTKALAEMRCIPVFLDEGIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEYNDKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSERFIRALELPEVQNHMKELKERFAGRKVMLGVDRLDMIKGIPQKTLAFEKFLEENSHWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAASIGYALDMPADEREKRHQFNFKHVTTHTSQEWAATFVSELNDTIVEAQLRTRQVPPLLPNKVSVDCYSKSNNRLIILGFNATLTEPADALGRGGGQIRELELKLHPSVKESLKKLSDDPKTTIVVLSGSDRAVLDKNFSEYNMWLAAENGMFLRLTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFEVRETSIVWNYKYADVEFGRIQARDLLQHLWTGPISNASLDVVQGGRSVEVRAVGVSKGAAIDRILGEIVHNKGMNAPIDYVLCIGHFLTKVDEDVYKFFEPELPTESSPVPTAMLSKSNSYRPSSLPKFSASKSGSKTSRYKRSLSTIERREIDRASGDPWRSTYGDRISLHEGSSVLDLKGDHYFSCAVGRKRSSARYLLKTSDDVVNLLGELVEHSSSPST. 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05955 934 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 94 559 IPR012766 GO:0003825|GO:0005992
Seca12g05955 934 MobiDBLite consensus disorder prediction 820 853 - -
Seca12g05955 934 CDD HAD_TPP 592 813 - -
Seca12g05955 934 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 86 340 - -
Seca12g05955 934 Pfam Glycosyltransferase family 20 94 559 IPR001830 GO:0003824|GO:0005992
Seca12g05955 934 MobiDBLite consensus disorder prediction 814 855 - -
Seca12g05955 934 Gene3D - 684 764 - -
Seca12g05955 934 Pfam Trehalose-phosphatase 621 836 IPR003337 GO:0003824|GO:0005992
Seca12g05955 934 Gene3D Glycogen Phosphorylase B; 341 543 - -
Seca12g05955 934 Gene3D - 620 808 IPR023214 -
Seca12g05955 934 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 341 543 - -
Seca12g05955 934 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 83 925 IPR001830 GO:0003824|GO:0005992
Seca12g05955 934 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 684 764 - -
Seca12g05955 934 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 93 562 - -
Seca12g05955 934 Gene3D Glycogen Phosphorylase B; 85 340 - -
Seca12g05955 934 MobiDBLite consensus disorder prediction 28 86 - -
Seca12g05955 934 MobiDBLite consensus disorder prediction 28 47 - -
Seca12g05955 934 SUPERFAMILY HAD-like 592 926 IPR036412 -
Seca12g05955 934 CDD GT20_TPS 94 559 IPR001830 GO:0003824|GO:0005992
Seca12g05955 934 FunFam Alpha,alpha-trehalose-phosphate synthase 618 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05955 Seca-Chr12 151369353 151378512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05955 1 932 Trehalose Biosynthesis Gene Families AT1G78580 74.132 0.0 1405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05955 K16055 - gmx:100816642 1621.29