Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05948 ATGATCTTTTACTTGATTCAGCTTGCAACCATGAGTTTTCCAAACCAATCCATGTCATCAGCTTCTCCTCAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACAACCAATCGCCAAGTTACCTTCTGCAAACGTAGAAATGGGTTGCTCAAGAAAGCATATGAGTTGTCTGTGCTTTGTGATGCAGAAGTTGCTCTTGTAGTCTTCTCAAGCCGTGGCCGTCTCTATGAATATGCAAACAACAGTGTGAAAGCAACAATTGAGAGGTACAAGAAATCATGTTCAGATCAATCGTCTAGTGGCGGATCCGCTTCTGAGGTTAATGCTCAGTTTTACCAGCAAGAAGCTGCCAAACTGCGTGTGCAAATCAGTAACCTGCAGAATCACAACAGGCAAGTTTGTTTTAGTTTATTTCTCATTTATTGGGATAAAAAGCAAATGATGGGCGAGGCTCTCAGCAATATGAATGCCAAGGAACTCAAAAACCTTGAGACTAAATTAGAGAAAGGAATTAGCAGAATTCGTTCCAAGAAGAACGAGTTGTTATTTGCAGAAATTGAGTACATGCAGAAAAGGGAAATAGACTTGCATAATAACAACCAACTTCTTAGAGCAAAGATAGCAGAAAGTGAGAGGAGCCACCATAACGTGAACGTGTTAGATGGAGGCAACTTTGAATCTATGCAATCTCATGATCAGCAGCAGTTTGATTCTCGCGGCTACTTCCAAGTGAATGGTTTACAACCCAATAATCACTATGCAAGGCAAGACCAAATGTCCCTTCAATTTGTTTGA 810 0.4099 MIFYLIQLATMSFPNQSMSSASPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVKATIERYKKSCSDQSSSGGSASEVNAQFYQQEAAKLRVQISNLQNHNRQVCFSLFLIYWDKKQMMGEALSNMNAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSHHNVNVLDGGNFESMQSHDQQQFDSRGYFQVNGLQPNNHYARQDQMSLQFV. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05948 269 Gene3D - 39 106 IPR036879 GO:0003677|GO:0046983
Seca12g05948 269 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
Seca12g05948 269 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Seca12g05948 269 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Seca12g05948 269 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
Seca12g05948 269 ProSitePatterns MADS-box domain signature. 29 83 IPR002100 GO:0003677|GO:0046983
Seca12g05948 269 ProSiteProfiles K-box domain profile. 114 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca12g05948 269 SUPERFAMILY SRF-like 28 99 IPR036879 GO:0003677|GO:0046983
Seca12g05948 269 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 229 - -
Seca12g05948 269 Pfam K-box region 149 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca12g05948 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677|GO:0046983
Seca12g05948 269 CDD MADS_MEF2_like 28 104 IPR033896 GO:0000977|GO:0045944
Seca12g05948 269 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677|GO:0046983
Seca12g05948 269 Coils Coil 114 134 - -
Seca12g05948 269 FunFam agamous-like MADS-box protein AGL11 39 123 - -
Seca12g05948 269 Coils Coil 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05948 Seca-Chr12 151308799 151316968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05948 17 269 MADS-box Gene Family AT3G58780 61.628 9.16e-103 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca12g05948 K-box 6.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05948 K09264 - gmx:732595 382.104