Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05942 ATGATCTCATCCAAACACTCCCTTATGACTTACCCCACCGCCGCCACCGTCCTCCTTTTCCTCTTCCTCGCCAACGAGATTTCATCAATTCTCGCCGGAAACCCCCACGTCATCAATTTCCGATCACCGAACCTTTACCCGGAAGGCCTCGCCTGGGATCCAACAGCGCAGCACTTCCTCGTCGGATCCCTCCGCCATCGCACTATCTCCGCAATCTCAGACGCCGGCGTCGTCGAAACCCTAATCTCGGACCCCTCCCTCCCCGAAAACGTCACCGTTTTAGGCCTCGCCGTCGATTCCCGCAACAACCGCGTCCTCGCCGCCCTCCACGCCATGGAACCCCTCCCTCCGTTCAACGCGCTCGCCGCCTACGACCTCCGCTCCCGCCGCCGCCTCTTCCTCTCCGTCCTCCCTTCCGGCGAACAATCACGAGCCATCGCAAACGACGTCGCAGTGGACTTCAAGGGAAACGCTTACGTCACGAACTCCGCTGGCAACTACATCTGGAAGGTTAACTCAAAAGGAGAGGCTTCAATCTTCTCGAACTCCCCGAGGTTCACGGAACATCCCGTGGACCGCGACACAACGTATAGTTTCTGTGGCCTCAACGGCATTGCTTACGTCAGCAGTGGTAACTACCTCCTGGTGGTGCAATCCAATACGGGCAAGATGTTCAAGGTTGATGCAGACGACGGCACGGCAAGGCTCGTGCTTCTTAACGAGGATCTCTTGTGCGCTGACGGCGTCGCTTTGAGGAGTGACGGCGTCGTTTTGGTGGTGTCCCCGGAAAGTGTCCACAAGTTGTGGTTCCTCAAGAGTAATGATGGATGGGGAGAGGGTGTGGTGTTTGACAAAATTGACCTCGACTTGGAAGGGTACCCTACTTCGGTTGTTGCCAGGGAGAGGGATAGCGCCTATGTGTTATATGGCCATGTGAAGGAGGGTATTTTGGGGAGTTCGGAGAGGGAGAGTTTTAGGATTGAGGAGAAGAGGTCCCCTAAAGAGAGTACTGAAGGGCAAGATTTTCAGATGAGGACATTTACCTTAAAGCAAATTAGAGATGCCACAGATGACTTCAGTCCTGCTAACAAGATTGGGGAAGGTGGTTTTGGTCCTGTCTACAAGATAACAGTTGGATTGCATGGTCAATTATCTGATGGTACATGGGTAGCAGTCAAACAACTCTCATCAAAGTCGCGGCAGGGAAACCGTGAATTTTTTAATGAGATAGGCATGATATCATGTTTGCAACACCCTAATCTTGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCCTATGCTTTATTCACAAAAGGTCTCGCATTTCTTCATGAAGAATCAAGGCTCAAGATTGTTCATCGAGATATCAAAGCTACTAATGTGTTACTGGATGGGAATTTAAATCCTAAAATATCTGATTTTGGGTTGGCTAGGCTTGATGAAGAGGAGAAGACCCATATCATCACTCGAGTGGCTAGTACAATAGGATATATGGCACCGGAGTATGCATTATGGGGTTACTTGACTTACAAGGCTGATGTTTACAGTTTTGGAGTTGTGGTCTTGGAAATTGCATGTCATCTGCAACGTACTGAAAACTTAATGAAACTGGTTGATGAAAGGTTAGGATCAGAAGTAAACCCAACTGAAGCAAATAATGTGCTGAAAGTAGCCCTGTTGTGCACAAATGCAGCGCCATCACTTAGGCCTACAATGTCTGAGGTTGTAAACATGCTTGAAGGAAGAACAAACATTCCGAATGTTATCCCAGAACAAAGTGTTCTCAGTGAAGATTTAAGGTTTAAAGCCATGAGGGACATCCATCAACAGAGGGAAAATCACAGCTTGAGCACAAGTCAAACAGACAATTCAACAGGAGTCCTTACACGTAGCTCTCCCTCAATATTTGGCAATGACATAAGTGAGATACCCTCAGCTTTATTTAAGCAGATGGTAGATTTCAGCTTCATTTATTTTGACAATTTATTTCAGCTTCTGTATATTTCTTATTGTTCATAG 2064 0.4767 MISSKHSLMTYPTAATVLLFLFLANEISSILAGNPHVINFRSPNLYPEGLAWDPTAQHFLVGSLRHRTISAISDAGVVETLISDPSLPENVTVLGLAVDSRNNRVLAALHAMEPLPPFNALAAYDLRSRRRLFLSVLPSGEQSRAIANDVAVDFKGNAYVTNSAGNYIWKVNSKGEASIFSNSPRFTEHPVDRDTTYSFCGLNGIAYVSSGNYLLVVQSNTGKMFKVDADDGTARLVLLNEDLLCADGVALRSDGVVLVVSPESVHKLWFLKSNDGWGEGVVFDKIDLDLEGYPTSVVARERDSAYVLYGHVKEGILGSSERESFRIEEKRSPKESTEGQDFQMRTFTLKQIRDATDDFSPANKIGEGGFGPVYKITVGLHGQLSDGTWVAVKQLSSKSRQGNREFFNEIGMISCLQHPNLVKLHGCCIEGDQLILVYEYMENNSLAYALFTKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLARLDEEEKTHIITRVASTIGYMAPEYALWGYLTYKADVYSFGVVVLEIACHLQRTENLMKLVDERLGSEVNPTEANNVLKVALLCTNAAPSLRPTMSEVVNMLEGRTNIPNVIPEQSVLSEDLRFKAMRDIHQQRENHSLSTSQTDNSTGVLTRSSPSIFGNDISEIPSALFKQMVDFSFIYFDNLFQLLYISYCS. 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05942 687 SUPERFAMILY Protein kinase-like (PK-like) 334 594 IPR011009 -
Seca12g05942 687 Gene3D Phosphorylase Kinase; domain 1 320 440 - -
Seca12g05942 687 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 338 630 - -
Seca12g05942 687 FunFam Os07g0541700 protein 440 509 - -
Seca12g05942 687 Gene3D Transferase(Phosphotransferase) domain 1 441 608 - -
Seca12g05942 687 Pfam Protein tyrosine and serine/threonine kinase 363 594 IPR001245 GO:0004672|GO:0006468
Seca12g05942 687 SUPERFAMILY Calcium-dependent phosphotriesterase 9 262 - -
Seca12g05942 687 SMART serkin_6 359 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05942 687 Gene3D - 34 311 IPR011042 -
Seca12g05942 687 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 328 440 - -
Seca12g05942 687 ProSiteProfiles Protein kinase domain profile. 359 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05942 687 FunFam Calcium-dependent phosphotriesterase superfamily protein 34 317 - -
Seca12g05942 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Seca12g05942 687 Pfam SMP-30/Gluconolactonase/LRE-like region 47 260 IPR013658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05942 Seca-Chr12 151233424 151237031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05942 335 629 Receptor kinase-like Gene Family AT1G53440 56.765 2.17e-110 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca12g05942 PK_Tyr_Ser-Thr 5.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05942 - - lja:Lj4g3v2618570.1 514.612