Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05941 ATGCTATCTAGAAGGACCTTCTTTGCTTTCTTAATCATTGCATTGAGTTGTTTCAGATGGCTGGAATTTGCAGAATCCAAACTACCCCAGGATGAGGTTAATGCCCTTAAAGAAATCACTAGTACGATGGGTGCCACCTATTGGAATTTTGATAGTGATTCTTGTCAAATTAAAATGGTGGGGTTGACACCAGAGCCACCTGATGGATCTAAAAGCAGCATCGATTGTGATTGCTCTTCTGAAAATGACACCTTCTGTCATGTAGTAAGGATTATGTTCAAGGGGTACAACCTTCCTGGCATGCTTCCACCTCAATTGGTTAAGCTTCCTTACCTCAGAGAAATTGATTTTGCTTTAAACTACCTAAATGGGACAATTCCAAAGGAATGGGCTTCAATGAAATTAACTTTTATCTCTCTATTTGTTAATCATTTATCAGGAGAAATTCCTATCGAGCTGGGAAATATTTCCACTCTCACATACCTGAACCTTGAAGCGAACCAATTTTCTGGCGATGTTCCCTCTGAACTTGGAAATCTATTTAACCTGCAGACTTTGATTTTATCATCCAATAAGTTGCTTGGGAACTTACCAGTGACATTTGCTCAGTTACAGAATTTGACAGATTTTAGGATAAATGATAATAGTTTCGACGGAAAAATACCTAGCTTCATACAGAATTGGAAACAACTTCATAGACTAGAAATGCATGCAACTGGACTGGAGGGACCTATCCCATCAAATATATCTCTTTTGACTAATTTATCTCAACTGAGGATTAGTGATGTAAATAGTCCAAGTCAGGATTTTCCTAATTTAAGCAACATGACAGGAATGATAAAATTGATTTTGAGAAATTGTAATATTACTGGAGAGCTTCCTACCTACTTCTGGACTATGAAGAGTTTGGAGATGTTGGATCTCAGTTTCAATAATTTGGTTGGGGAAATACCAGAAACTATACATGTGGGGCATCTGAGATTCCTCTTCCTAACTGGCAACAAGCTAAGTGGTGATGTACCTGCCTCAATCTTGATGGATGGAAGCAATGTTGATCTTTCATACAACAACTTTACGTGGCAAGGACCTGAGAGACCTGCTTGTGGAGATCACCTGAATTTAAACCTAAACTTGTTCCGGAGCTCCTCAGGGATCAATGAATTACAGGGGATTCTTCCATGTTCAAAAACATTCAACTGTCCTAGATATTCAAGTTGTCTGCATGTTAATTGTGGTGGAAACGATATACAGGTGAGGGGAAATGATGAAAATATCCTCTATGTAGGAGATGGAGACGTGGTTGGTGGTGCTGCTAAATATTTTAATGATTATAATAATTACTGGGGCTTTAGTAGCACTGGGGACTTCATGGATGATGGTGATTACCAAAATTTACGTTACACCAGGTCTTTATCATCTTCAAGTTTGCCTGAAATATATACAACGGCTCGTGTCTCTCCGATTTTGCTTACTTATTTTCACTATTGCTTGGAAAATGGGAAATATACTGTAAATCTCCACTTTGCAGAAATAATATTTACAAATGATAACACATCTAGAAGTCTTGGGAGGCGCTTATTTGATATCTATGTTCAGGAAAGGTTAATTTGGAAGGATTTTAATATTGAAGGTGAAACACACGCTGCTCAAAAACCACGCATAATATCAATTCATAATGTCACTGTAACAGACAATATTCTGGAGATTCGATTCTATTGGGCTGGCAAGGGGACTACAAGGATTCTTCCTGTTGGCAGTGTTTATGGTCCCCTCATATCAGCTTTCTCTATTGTTTCTGATTCTAAACCTTGTTCAGACCGAAATAGTGGAAGGCATAAAATAGTCATTGGAGTTGGATTTGGAGTTTCAGCTCTATGCCTAGTCCTCATTATAGTAGGAATCTTTTGGAGGAAAGGCTGCATGAAAGGAATAATTAGAACAGAAAGAGGTACTGAAGGGCAAGATTTTCAGATGAGGACATTTACCTTAAAGCAAATTAGAGATGCCACAGATGACTTCAGTCCTGCTAACAAGATTGGGGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATGGATAGCAGTCAAACAACTCTCATCAAAGTCGCAGCAGGGAAACCGTGAATTTTTGAATGAGATAGGCATGATATCATGTTTGCAACACCCTAATCTTGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCCTATGCTTTATTCAGCTCAAAAAATCAGCATAATCTGGATTGGCCTACAAGGCTTAGGATCTGCATTGGCATAGCAAAAGGTCTTGCATTTCTTCATGAAGAATCAAGGCTCAAGATTGTTCATCGAGATATCAAAGCTACTAATGTGTTACTGGATGGGAATTTAAATCCTAAAATATCTGATTTTGGGTTGGCTAGGCTTGATGAAGAGGAGAAGACCCATATCATCACCCGAGTGGCTGGTACAATAGGATATATGGCACCGGAGTATGCATTATGGGGTTACCTGACTTACAAGGCTGATGTTTACAGTTTTGGAGTTGTGGTCTTGGAAATTGTTAGTGGGAAGAGCAATCACAATTACATGCCAAGTGATAATTGTGTTTGTCTTTTAGATAGGGCATGTCATCTGCAACGTACTGAAAACTTAATGAAACTGGTTGATGAAAGGTTAGGATCAGAAGTAAACCCAACTGAAGCAAATAATGTGCTGAAAGTAGCCCTGTTGTGCACAAATGCAGCGCCATCACTTAGGCCTACAATGTCTGAGGTTGTAAACATGCTTGAAGGAAGAACAAACATTCCGAATGTTATCCCAGAACAAAGTGTTCTCAGTGAAGATTTAAGGTTTAAAGCCATGAGGGACATCCATCAACAGAGGGAAAATCACAGCTTGAGCACAAGTCAAACAGACAATTCAACAGGAGTCCTTACACGTAGCTCTCCCTCAATATTTGGCAATGACATAAGTGAGATACCCTCAGAATCATAA 3036 0.39 MLSRRTFFAFLIIALSCFRWLEFAESKLPQDEVNALKEITSTMGATYWNFDSDSCQIKMVGLTPEPPDGSKSSIDCDCSSENDTFCHVVRIMFKGYNLPGMLPPQLVKLPYLREIDFALNYLNGTIPKEWASMKLTFISLFVNHLSGEIPIELGNISTLTYLNLEANQFSGDVPSELGNLFNLQTLILSSNKLLGNLPVTFAQLQNLTDFRINDNSFDGKIPSFIQNWKQLHRLEMHATGLEGPIPSNISLLTNLSQLRISDVNSPSQDFPNLSNMTGMIKLILRNCNITGELPTYFWTMKSLEMLDLSFNNLVGEIPETIHVGHLRFLFLTGNKLSGDVPASILMDGSNVDLSYNNFTWQGPERPACGDHLNLNLNLFRSSSGINELQGILPCSKTFNCPRYSSCLHVNCGGNDIQVRGNDENILYVGDGDVVGGAAKYFNDYNNYWGFSSTGDFMDDGDYQNLRYTRSLSSSSLPEIYTTARVSPILLTYFHYCLENGKYTVNLHFAEIIFTNDNTSRSLGRRLFDIYVQERLIWKDFNIEGETHAAQKPRIISIHNVTVTDNILEIRFYWAGKGTTRILPVGSVYGPLISAFSIVSDSKPCSDRNSGRHKIVIGVGFGVSALCLVLIIVGIFWRKGCMKGIIRTERGTEGQDFQMRTFTLKQIRDATDDFSPANKIGEGGFGPVYKGQLSDGTWIAVKQLSSKSQQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLILVYEYMENNSLAYALFSSKNQHNLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLARLDEEEKTHIITRVAGTIGYMAPEYALWGYLTYKADVYSFGVVVLEIVSGKSNHNYMPSDNCVCLLDRACHLQRTENLMKLVDERLGSEVNPTEANNVLKVALLCTNAAPSLRPTMSEVVNMLEGRTNIPNVIPEQSVLSEDLRFKAMRDIHQQRENHSLSTSQTDNSTGVLTRSSPSIFGNDISEIPSES. 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05941 1011 Gene3D Phosphorylase Kinase; domain 1 643 748 - -
Seca12g05941 1011 Pfam Malectin domain 406 595 IPR021720 -
Seca12g05941 1011 Gene3D Ribonuclease Inhibitor 269 386 IPR032675 -
Seca12g05941 1011 SUPERFAMILY Protein kinase-like (PK-like) 656 946 IPR011009 -
Seca12g05941 1011 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 266 387 - -
Seca12g05941 1011 ProSiteProfiles Protein kinase domain profile. 673 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05941 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase 749 955 - -
Seca12g05941 1011 Gene3D - 404 602 - -
Seca12g05941 1011 SMART serkin_6 673 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05941 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 600 - -
Seca12g05941 1011 MobiDBLite consensus disorder prediction 974 1011 - -
Seca12g05941 1011 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Seca12g05941 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Seca12g05941 1011 Pfam Protein tyrosine and serine/threonine kinase 677 943 IPR001245 GO:0004672|GO:0006468
Seca12g05941 1011 CDD STKc_IRAK 679 945 - -
Seca12g05941 1011 MobiDBLite consensus disorder prediction 977 1011 - -
Seca12g05941 1011 Gene3D Ribonuclease Inhibitor 197 268 IPR032675 -
Seca12g05941 1011 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 979 - -
Seca12g05941 1011 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 264 - -
Seca12g05941 1011 Gene3D Ribonuclease Inhibitor 31 196 IPR032675 -
Seca12g05941 1011 SUPERFAMILY L domain-like 74 342 - -
Seca12g05941 1011 Gene3D Transferase(Phosphotransferase) domain 1 749 956 - -
Seca12g05941 1011 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 643 748 - -
Seca12g05941 1011 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05941 Seca-Chr12 151213967 151227978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05941 8 838 Receptor kinase-like Gene Family AT1G29750 61.418 0.0 1037
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g05941 PK_Tyr_Ser-Thr 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05941 - - mtr:11406167 1638.62