Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05938 ATGGCTAATGACTCAGCAAGAATTGAAACACATGAAGTTGTTTTGAATGTAAATAAGGATGTCTCCAAAACACATGAAGGCTCAGACACCTATGTCCCTTTCTTGCAGAAGTTGGTAGCTGAGGTGGTGGGCACATATTTCTTGATATTTGCAGGGTGTGCTTCAGTGGTGGTGAACAAGGGCTACGACAATGTGGTGACACTTACTGGGATTTCAATTGTTTGGGGACTGGTTGTGATGGTTATGGTACCAGCTTACATAGCAGCTCAGCTGATTGGAGCCACACTTGCAAGTGGAACTCTGAAACTGATATTTAGTGGGAGCCATGACAAGTTTCCAGGAACACTTCCAGCTGGATCTACCATGCAAGCTTTTTGGGTTGAATTCATAATAACTTTTTACCTTATGTTTGTCATATCCGGGGTTGCTACTGATAACAGAGCGATTGGTGAGTTGGCTGGTCTTGCAATTGGGTCTACAGTACTGCTGAATGTGATGATTGCAGGGCCGGTGACAGGAGGATCAATGAACCCAGTGAGAAGCCTAGGACCTGCTTTTCTACACAGTGAATACAGAGGAATATGGATATACTTGGTGTCACCGGTTCTGGGGGCGGTGGCCGGAGCATGGGTCTATAACATTGTTAGGTTCACGGACAAGCCATTGCTCCATCTTCTTTCCCATCTCAAAGGAAGCAAATTTCCCCTGTTCCTTTATCAGTTGTTTGTTTCCTTGGTTCTGTCTGTCATGGATGAGGATTCAGCAAGAAATGCAACCCATGAAGTAGCTTTAGATGTAAACAAGGATGTCTCAAAAACAAGTGAAGACTCAGGCATCTATGTCTCTGTTTCTTTCTTGCAGAAGTTGGTAGCTGAAGTGGTGGGCACATATTTCTTGATATTTGCTGGCTGTGCTTCAGTGGTGGTGAACAAGAACAATGATAATGTAGTGACACTTCCTGGGATTTCAATTGTTTGGGGACTGGTTGTGATGGTGCTTGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATAGCTTTTGCCACCATCAAAAGGTTTCCTTGGAAGCAGGTACCAGCTTATGTGGCAGCCCAAGTCCTTGGATCCACACTTGCAAGTGGAACTCTGAGACTAATATTTAGTGGCAAGCATGACCAGTTTTCAGGAACACTCCCAGCTGGTTCTAACCTGCAAGCTTTTATTGGTGAGTTGGCTGGGATTGCCGTTGGGTCTACTGTACTGTTGAACGTGATGTTTGCAGGGCCCATCACAGGAGCATCAATGAACCCAGCAAGAAGCATAGGGCCTGCATTTGTACACCATGAATATAGAGGAATTTGGGTATATTTGGTATCTCCAATTCTGGGTGCTGTGGCTGGTGCATGGGTCTATAACATCATTCGATACACAGATAGGCCTGTCCGTGAAATAACCCAAAGTGCCTCTTTCCTCAAAGGAGCAGGCCGTAGTGGTGGCTCAAGGTGA 1503 0.4544 MANDSARIETHEVVLNVNKDVSKTHEGSDTYVPFLQKLVAEVVGTYFLIFAGCASVVVNKGYDNVVTLTGISIVWGLVVMVMVPAYIAAQLIGATLASGTLKLIFSGSHDKFPGTLPAGSTMQAFWVEFIITFYLMFVISGVATDNRAIGELAGLAIGSTVLLNVMIAGPVTGGSMNPVRSLGPAFLHSEYRGIWIYLVSPVLGAVAGAWVYNIVRFTDKPLLHLLSHLKGSKFPLFLYQLFVSLVLSVMDEDSARNATHEVALDVNKDVSKTSEDSGIYVSVSFLQKLVAEVVGTYFLIFAGCASVVVNKNNDNVVTLPGISIVWGLVVMVLVYSVGHISGAHFNPAVTIAFATIKRFPWKQVPAYVAAQVLGSTLASGTLRLIFSGKHDQFSGTLPAGSNLQAFIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFVHHEYRGIWVYLVSPILGAVAGAWVYNIIRYTDRPVREITQSASFLKGAGRSGGSR. 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05938 500 CDD MIP 287 473 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g05938 500 PRINTS Major intrinsic protein family signature 416 438 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g05938 500 PRINTS Major intrinsic protein family signature 363 382 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g05938 500 PRINTS Major intrinsic protein family signature 287 306 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g05938 500 PRINTS Major intrinsic protein family signature 326 350 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g05938 500 PRINTS Major intrinsic protein family signature 453 473 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g05938 500 SUPERFAMILY Aquaporin-like 31 225 IPR023271 -
Seca12g05938 500 SUPERFAMILY Aquaporin-like 281 484 IPR023271 -
Seca12g05938 500 Gene3D Glycerol uptake facilitator protein. 411 486 IPR023271 -
Seca12g05938 500 Gene3D Glycerol uptake facilitator protein. 248 410 IPR023271 -
Seca12g05938 500 Gene3D Glycerol uptake facilitator protein. 84 222 IPR023271 -
Seca12g05938 500 Gene3D Glycerol uptake facilitator protein. 2 83 IPR023271 -
Seca12g05938 500 Pfam Major intrinsic protein 282 409 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g05938 500 Pfam Major intrinsic protein 83 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca12g05938 500 PANTHER AQUAPORIN NIP2-1 22 83 IPR034294 -
Seca12g05938 500 ProSitePatterns MIP family signature. 344 352 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05938 Seca-Chr12 151185780 151193517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05938 283 496 Major Intrinsic Protein MIP AT5G37820 54.008 1.07e-84 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05938 K09874 - gmx:100794883 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05938 12 151185780 151193517 Seca12g05938 12 151185780 151193517 ECH
Seca12g05938 12 151185780 151193517 Seca6g04710 6 114648503 114650669 PCT