Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05935 ATGGATGAAGCACAGGGCAGTTCAAGTTCCTTGCCTCCTTTCCTGGCAAAGACTTATGAAATGGTGGATGATCCTTCCACGGATCCGATTGTTTCCTGGAGTGTCAATAACAGAAGTTTCATTGTATGGAATCCCCCAGATTTTGCAAGGGATTTGCTTCCTAGATTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGGCAGCTGAACACATATGTAAGCAAATTTGATGGATTTAGGAAAGTTGACCCTGAACAATGGGAATTTGCCAATGATGATTTTGTAAGGGGGCAACCACATCTTATGAAGAATATCCATAGACGGAAGCCAGTTCATAGCCATTCTTTACAGAATCTTCAAGCACAAGCCCCTCTAGCTGAGTCAGAGAAGCAGAGTTTAAATGATGAAATTAAGAAGCTTAAGCATGATAAAGAACGACTCCTTATGGAGTTACAGAGACATCAACATGAGTGGCAAACATATGAGATACAAATACATTGTTCAAAAGATCGGTTGGAGAAGTTGGAACAGAAGCAACAAAAGATGGTCTCTTCTGTTTCTCAAGTATTGCACAAACCTGTGCTTTCTGTAAATCTCTTGCCACTGACAGAAACCATGGATAGAAAAAGGAGGTTGCCAAGAAGTGGCTACTTTAATGATGAAGCTAGCAATGAAGATGCTATTGAAACTTCACAGATGTTACCCACAGAAAATGCAGAGGGTGCCTCTGTTTTGACATCAAACATGGAGAGATTGGACCAGCTTGAGTCATCCATGGTATTTTGGGAGACTATTGCACAAGAAATTGGTGACACCTTCACTCATATTAACTCAAACATGGATTTTGATGAATCTACCAGTTGTGCTGATAGTCTGTCTATATCTTGTGCGCAACTAGATGTTGAAGTTCGGCCTAAGTCACCTGGAATTGACATGAACTCTGAGCCAGCTGCAGCTGCTGCTCCTGAGCCTGTTGCATCCAAAGAACAACCTGCAGGAACTGTCACTGCAGCAACTGGTGTTAATGATGTGTTCTGGGAACAATTCTTGACAGAGGATCCTGGTGCATCTGAAGCACAGGAAGTGCAGTCAGAGAGAAAGGATTATAATGGCAGAAAAAATGAAGGAAAACCTAAGGACCACGGCAGATTTTGGTGGAATATGCGGAATGCAAATAATCTTTCAGAACAAATGGGGCATGTTGGTCAAGTAGAGAAAACTTAG 1224 0.415 MDEAQGSSSSLPPFLAKTYEMVDDPSTDPIVSWSVNNRSFIVWNPPDFARDLLPRFFKHNNFSSFIRQLNTYVSKFDGFRKVDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQAPLAESEKQSLNDEIKKLKHDKERLLMELQRHQHEWQTYEIQIHCSKDRLEKLEQKQQKMVSSVSQVLHKPVLSVNLLPLTETMDRKRRLPRSGYFNDEASNEDAIETSQMLPTENAEGASVLTSNMERLDQLESSMVFWETIAQEIGDTFTHINSNMDFDESTSCADSLSISCAQLDVEVRPKSPGIDMNSEPAAAAAPEPVASKEQPAGTVTAATGVNDVFWEQFLTEDPGASEAQEVQSERKDYNGRKNEGKPKDHGRFWWNMRNANNLSEQMGHVGQVEKT. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05935 407 MobiDBLite consensus disorder prediction 359 384 - -
Seca12g05935 407 FunFam Heat shock transcription factor 1 7 109 - -
Seca12g05935 407 SUPERFAMILY "Winged helix" DNA-binding domain 9 108 IPR036390 -
Seca12g05935 407 Pfam HSF-type DNA-binding 14 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g05935 407 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g05935 407 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g05935 407 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g05935 407 Gene3D - 6 109 IPR036388 -
Seca12g05935 407 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 302 IPR027725 -
Seca12g05935 407 SMART hsfneu3 10 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g05935 407 MobiDBLite consensus disorder prediction 307 330 - -
Seca12g05935 407 Coils Coil 116 157 - -
Seca12g05935 407 MobiDBLite consensus disorder prediction 352 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05935 Seca-Chr12 151147607 151148916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05935 7 407 HSF AT4G18880 51.691 6.18e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca12g05935 HSF_DNA-bind 1.6e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05935 K09419 - gmx:100798004 692.189