Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05930 ATGGCTTCGGCTGCTATTTTCTCGTCGCTCCGGCGACGGAGGTCGCCGTCGCTGGAGGCGTTTCTGGCACCGGTGGAGCTGAACAACGCGGCGTTGGTCGAGACACTAGTGGCGGTTACCCGCGACCTTGTCCTGTGCTTCTCCGACCACTCCTTCTCCTTCCAACGCAGAAACTCGCGTTCACTCATCAGAAAAGTGGAGGTTCTGCAGTTACTGTTAGAGTGCTTAAGAGACTCCTCCTCCTCTTCCGCCGCCGTCACTCTCCCTCCCACGGCGGTGCTCTGCCTGAAGGAGCTGTACTTGCTTCTCTATCGTTCCAAGATTCTCCTCGATCACTGCGCTCAATCGAGTAAGCTATGGCTCTTACTTCAGAACCATTCTATTTCCGGTCACTTCAATGATTTGAACCGAGAAATTTCGACCCTTTTGGACGTTTTTCCTGTTAGGGACATTAACCTAAACGACGACGTTAGGGAACAGGTTGAGTTGTTAAGGGAACAACTAAAAAAAGCTAAGTTGTTTATAGACAAGAACGATGATGCCCTTAGAACAAGGTTCTTTTGGTTACTTGATGAGTTTGAAAACGGGAGGGTTCCTGATTCTGAGGATTTGAGGTGTTTTTTTGTGGGTGAGTTGCAGATTGTTGATGCTAGGAGTTGTAAGGAAGAAGTTGAAGCATTGGAGGAGGAGATTGTTAATCATGAAGGTGATGTTGAGCCAACGGTTCCAGTGCTTAATGGGATGGTGGCTATAACAAGGTATTGCAGGTTCTTGCTCTTTGGGTTTGAGGAAGATGAGGTTGTTTGTTTGGATAATGGGAAGAAGAGCAACAAGAAGAGATTGATTTCTCAAGAGATTGGGGAAACGTTTTTGACTGTTCCAAAGGACTTTTGCTGTCCTATATCATTGGATTTGATGGGTGATCCTGTGATAATTTCAACAGGGCAAACATATGATCGGAGGTCTATTTCAAGGTGGATGGAAGAAGGGCATTGTACTTGTCCGAAAACAGGGCAATTGCTTTCACACAACCGTATTGTTCCTAATCGTGCTCTTAGGAACTTGATCATGCAGTGGTGCAATGCACATGGGGTAACCTATGATCCACCTGAGGTTGTTGATGCATCTGCTGAAATGTTTGTATCTGCTTGTCCCTCCAAAGCTTCAATTGAAGCTAATAGAGGGACTGCAACACTTCTCATTCAGCAGCTAGCTGATGGGACACAAGCTGCAAAGACTGTGGCTGCTAGGGAGATTCGGTTGCTAGCAAAAACTGGGAAAGAAAACCGTGCCTTCATTGCGGAAGCAGGGGCGATTCCTTACCTTAGGAACTTGCTTTCCTCTCCTAACACTGTTGCACAGGAGAATTCAGTAACTGCATTGCTCAACCTATCCATTTTTGAGGGAAATAAAAGTCGGATCATGGAGGAGGAAGGATGTCTGGGATCAATAGTTGAGGTGTTGAGATTTGGGCACACAACGGAGGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTTTCTGCTGTCCATGATTATAAGAAAAGAATTGCAGATAGTGTGGGAGCTATTGAAGCACTGGCAGAACTGTTACAAGAGGGGACCCCAAGAGGAAAAAAGGATGCTGTAACAGCATTATTTAATCTTTCCACTAACACAGAGAATTGTTTGAGAATGGTAGAAGCAGGGGCGATTACTGCTCTAGTTGAGGCTTTGGGGAATGAAGGAGCTGCTGAGGAAGCAGCTGGTGCCTTGGCCCTGATTGTTAGGCAGCCTATTGGGGCCAAAGCAGTGGTGAGGGAGGAAGCAGCAGTGGCTGGATTGATAGGAATGATGCGTTGTGGAACACCAAGAGGGAAAGAGAATGCAGTTGCAGCATTGCTGGAGTTGTGCCGGAGTGGTGGTGCAGCTGCAACTGAAAGGGTGGTTAGGGCGCCGGCTTTGGCTGGATTACTTCAGACCCTGCTTTTCACTGGGACAAAGCGGGCAAGAAGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAGAATGCATCTCTACATTATGGTGGATTAGGTGTAGGGTATACACTTGCTAGCAATTCAGCTCCGACTAGGGATACAACCTTTGCTGGTGATGTTTCAGTTCCAATGTCCATTTCTGTCCCTGTTCTATAG 2163 0.4702 MASAAIFSSLRRRRSPSLEAFLAPVELNNAALVETLVAVTRDLVLCFSDHSFSFQRRNSRSLIRKVEVLQLLLECLRDSSSSSAAVTLPPTAVLCLKELYLLLYRSKILLDHCAQSSKLWLLLQNHSISGHFNDLNREISTLLDVFPVRDINLNDDVREQVELLREQLKKAKLFIDKNDDALRTRFFWLLDEFENGRVPDSEDLRCFFVGELQIVDARSCKEEVEALEEEIVNHEGDVEPTVPVLNGMVAITRYCRFLLFGFEEDEVVCLDNGKKSNKKRLISQEIGETFLTVPKDFCCPISLDLMGDPVIISTGQTYDRRSISRWMEEGHCTCPKTGQLLSHNRIVPNRALRNLIMQWCNAHGVTYDPPEVVDASAEMFVSACPSKASIEANRGTATLLIQQLADGTQAAKTVAAREIRLLAKTGKENRAFIAEAGAIPYLRNLLSSPNTVAQENSVTALLNLSIFEGNKSRIMEEEGCLGSIVEVLRFGHTTEARENAAATLFSLSAVHDYKKRIADSVGAIEALAELLQEGTPRGKKDAVTALFNLSTNTENCLRMVEAGAITALVEALGNEGAAEEAAGALALIVRQPIGAKAVVREEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYTLASNSAPTRDTTFAGDVSVPMSISVPVL. 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05930 720 FunFam RING-type E3 ubiquitin transferase 292 367 - -
Seca12g05930 720 SUPERFAMILY RING/U-box 281 367 - -
Seca12g05930 720 Gene3D - 397 672 IPR011989 -
Seca12g05930 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 368 IPR013083 -
Seca12g05930 720 ProSiteProfiles U-box domain profile. 292 366 IPR003613 GO:0004842|GO:0016567
Seca12g05930 720 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Seca12g05930 720 SMART arm_5 467 509 IPR000225 GO:0005515
Seca12g05930 720 SMART arm_5 511 551 IPR000225 GO:0005515
Seca12g05930 720 SMART arm_5 591 632 IPR000225 GO:0005515
Seca12g05930 720 SMART arm_5 552 590 IPR000225 GO:0005515
Seca12g05930 720 SMART arm_5 426 466 IPR000225 GO:0005515
Seca12g05930 720 Gene3D - 50 149 IPR036537 GO:0007166
Seca12g05930 720 CDD RING-Ubox_PUB 294 343 IPR045210 -
Seca12g05930 720 SMART Ubox_2 296 359 IPR003613 GO:0004842|GO:0016567
Seca12g05930 720 FunFam RING-type E3 ubiquitin transferase 369 694 - -
Seca12g05930 720 Pfam U-box domain 293 363 IPR003613 GO:0004842|GO:0016567
Seca12g05930 720 PANTHER U BOX DOMAIN-CONTAINING 57 677 - -
Seca12g05930 720 Pfam Armadillo/beta-catenin-like repeat 427 465 IPR000225 GO:0005515
Seca12g05930 720 Coils Coil 154 174 - -
Seca12g05930 720 SUPERFAMILY ARM repeat 393 674 IPR016024 -
Seca12g05930 720 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Seca12g05930 720 Coils Coil 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05930 Seca-Chr12 151117818 151119980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05930 1 720 U-box Gene Family AT1G29340 67.711 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05930 - - gmx:100797462 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05930 12 151117818 151119980 Seca12g05930 12 151117818 151119980 ECH
Seca12g05930 12 151117818 151119980 Seca6g04721 6 114781991 114784147 PCT