Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05921 ATGGGAAGCCAAGAGGTGAAGCTTGTGAGCTTTTGGGTGAGTCCTTTTGCTAAAAGGGTTGAGTGGGCCTTGAAACTTAAGGGTATTGATTTTGAGTATATAGAAGAAGATGTCTTCAACAAAAGTAGTCTCCTTTTGGAGTTGAACCCGGTTCACAAGAAGGTGCCAGTTCTTGTCCATGCCCAGAAATCCATTGCTGAGTCATTCATTATCCTTCAATACATTGATGAAACATGGAACCAATATCCACTTTTGCCTCACCATCCTTATCAAAGAGCTCTTGCTCGCTTTTGGGCTAATTTTGGTGAACAAATTCTTTTGAGTCAAGTATCGATTGCAATGTGTGGCAGCGGGGATGAAAAGGAAAAGGCTGTGAGTGGAGCCAAAGAAGCAATGGAGAAAATAGAAGAGGAGATTAAGGGGAAGAAATTCTTTGGAGGGGACAATATTGGGTACCTTGACCTTGCACTTGGATGGATTTCTTATTTGATTCCTGTTTTGGAGGAAGTTGGGTTTATGCAAATAATAGACCCATTGACATGTCCAGCAATCACTACATGGATGACCAATTTTCTCAACCACCCTGTGATCAAGGACAGCTTGCCCCCAAGAGACAAGATGCTTGTTTACTTTCAAGGTTTCATGGCTGGTTTAATAAGGTCTAGATCCATGTCATACAAGATCATGGGAAGCCAAGAGGTGAAGCTTGTGAGCTTTTGGGCGAGTCCTTTTGGTAAAAGGGTTGAGTGGGCCATGAAACTCAAGGGTATTGAGTTTGAGTACATAGAAGAAGATATCTTCAACAAGAGTAGTCTCCTTTTAGAGTTGAACCCAGTTCACAAGAAGGTGCCTGTTCTTGTCCATGCCCAGAAACCCATAGCTGAGTCATTCATCATCCTTGAATACATTGATGAAACATGGAACAACCAATTTCCACTTTTGCCTCACAATCCTTATCAAAGAGCTCTTGCTCGCTTTTGGGCTAATTTTGGTGAACAAAAGCTTTTGGATGCAGCATGGATTGCAATGTGTAGCAGCGGGGATGAACAGGAAAAGGCTGTGAATGTAGCCAAAGAAGCAGTGGAGAAAATAGAAGAGGAGATTAAGGGGAGGAAATTATTTGGAGGGGACAATATTGGGTACCTTGACCTTGCACTTGGATGGATTTCTTATTGGATTCCTGTTTGGGAGGAAGTTGGGTCTATGCAAATAATAGACCCATTGAAATTTCCAGCCACCACTACATGGATGACCAATTTTCTCAGCCACCCTGTTATCAAGGACAACTTGCCCCCAAGAGACAAGATGCTTGTTTACTACCACAGTCGCAGAGAGGCATTGTCTTCAAGGTTTCATGGCTGGTTCAAGGTCTAG 1374 0.4279 MGSQEVKLVSFWVSPFAKRVEWALKLKGIDFEYIEEDVFNKSSLLLELNPVHKKVPVLVHAQKSIAESFIILQYIDETWNQYPLLPHHPYQRALARFWANFGEQILLSQVSIAMCGSGDEKEKAVSGAKEAMEKIEEEIKGKKFFGGDNIGYLDLALGWISYLIPVLEEVGFMQIIDPLTCPAITTWMTNFLNHPVIKDSLPPRDKMLVYFQGFMAGLIRSRSMSYKIMGSQEVKLVSFWASPFGKRVEWAMKLKGIEFEYIEEDIFNKSSLLLELNPVHKKVPVLVHAQKPIAESFIILEYIDETWNNQFPLLPHNPYQRALARFWANFGEQKLLDAAWIAMCSSGDEQEKAVNVAKEAVEKIEEEIKGRKLFGGDNIGYLDLALGWISYWIPVWEEVGSMQIIDPLKFPATTTWMTNFLSHPVIKDNLPPRDKMLVYYHSRREALSSRFHGWFKV. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05921 457 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Seca12g05921 457 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 211 IPR010987 -
Seca12g05921 457 Gene3D Glutaredoxin 230 316 - -
Seca12g05921 457 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 317 446 IPR010987 -
Seca12g05921 457 CDD GST_C_Tau 318 439 IPR045074 GO:0004364|GO:0006749
Seca12g05921 457 FunFam Tau class glutathione S-transferase 314 450 - -
Seca12g05921 457 FunFam Tau class glutathione S-transferase 85 221 - -
Seca12g05921 457 CDD GST_N_Tau 6 79 - -
Seca12g05921 457 Gene3D - 85 219 - -
Seca12g05921 457 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
Seca12g05921 457 Pfam Glutathione S-transferase, N-terminal domain 233 305 IPR004045 -
Seca12g05921 457 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Seca12g05921 457 SFLD Main (cytGST) 230 449 - -
Seca12g05921 457 Coils Coil 347 367 - -
Seca12g05921 457 CDD GST_C_Tau 89 214 IPR045074 GO:0004364|GO:0006749
Seca12g05921 457 Gene3D Glutaredoxin 1 84 - -
Seca12g05921 457 Gene3D - 317 450 - -
Seca12g05921 457 FunFam Tau class glutathione S-transferase 229 316 - -
Seca12g05921 457 SUPERFAMILY GST C-terminal domain-like 305 445 IPR036282 -
Seca12g05921 457 FunFam Tau class glutathione S-transferase 1 87 - -
Seca12g05921 457 SUPERFAMILY Thioredoxin-like 5 105 IPR036249 -
Seca12g05921 457 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 232 311 IPR004045 -
Seca12g05921 457 Coils Coil 118 138 - -
Seca12g05921 457 SUPERFAMILY Thioredoxin-like 233 334 IPR036249 -
Seca12g05921 457 SFLD Glutathione Transferase (cytosolic) 2 217 IPR040079 -
Seca12g05921 457 SFLD Main.3: Omega- and Tau-like 2 217 IPR045073 -
Seca12g05921 457 SFLD Main.3: Omega- and Tau-like 230 449 IPR045073 -
Seca12g05921 457 CDD GST_N_Tau 234 307 - -
Seca12g05921 457 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 238 436 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05921 Seca-Chr12 151056798 151067544 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05921 230 448 Glutathione S-transferase Gene Family AT2G29420 42.922 9.98e-66 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05921 K00799 - tpra:123914566 702.59