Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05920 ATGATGGGAAGCCAAGAAGTGAAGCTGCTGAACATTTTGCTGAGTCCAATGTGTCGCAGGGTTGAATGGGCTCTAAAACTCAAGGGTATTGATTATGAGAACATAGAAGAAGATATCTTCAACTTAAGCACTCTCCTTAAGGAGTTGAACCCGGTTCACAATAAGGCTCCGGTTCTTGTTCATCGTCAGAAACCAATCGCTGAGTCACTCATCATCCTTGAATACATCGATGAAACATGGAACCAATATCCTTTGATGCCTCACCATCCTCATCAAAGAGCTCTTGCTCGCTTTTGGGCTAACTTAGCTGATGACAAGCTTGCGAAGGGTTCATGGGTTGCAATAATGCGTAGCAGTGGGGATGAACAGGAAAAGAAAGTGAAGGAAGTAAGAGAAGTAATGGAGAAGCTAGAAGAAGAGATTAAGGGGAAGAAATTCTTTGGAGGGGACAATATTGGGTACCTTGACATTGTACTTGGATGGATCACTTGTTGGCTTCCTATTTGGGAGGAAGTTGGGTGTGTGCAGGTACTTGACCCATTGAAATGTCCATCTATTGCTGCTTGGAAGACCAATTTTCTGAACCACCCTGTCATCAAGGACTGCTTACCACAAAGGGACAAGATGCTTGTTTATTGCCATCGTCGCTTAGAACAATATTCTTCTAGTACTCGTCATGCCTGA 684 0.4357 MMGSQEVKLLNILLSPMCRRVEWALKLKGIDYENIEEDIFNLSTLLKELNPVHNKAPVLVHRQKPIAESLIILEYIDETWNQYPLMPHHPHQRALARFWANLADDKLAKGSWVAIMRSSGDEQEKKVKEVREVMEKLEEEIKGKKFFGGDNIGYLDIVLGWITCWLPIWEEVGCVQVLDPLKCPSIAAWKTNFLNHPVIKDCLPQRDKMLVYCHRRLEQYSSSTRHA. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05920 227 SUPERFAMILY Thioredoxin-like 7 107 IPR036249 -
Seca12g05920 227 Gene3D - 86 224 - -
Seca12g05920 227 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Seca12g05920 227 Coils Coil 120 140 - -
Seca12g05920 227 SFLD Main (cytGST) 3 224 - -
Seca12g05920 227 Pfam Glutathione S-transferase, C-terminal domain 114 197 IPR004046 -
Seca12g05920 227 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 210 IPR010987 -
Seca12g05920 227 FunFam Tau class glutathione S-transferase 86 223 - -
Seca12g05920 227 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 11 209 IPR045073 -
Seca12g05920 227 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Seca12g05920 227 CDD GST_C_Tau 90 212 IPR045074 GO:0004364|GO:0006749
Seca12g05920 227 Gene3D Glutaredoxin 2 85 - -
Seca12g05920 227 SUPERFAMILY GST C-terminal domain-like 78 218 IPR036282 -
Seca12g05920 227 SFLD Main.3: Omega- and Tau-like 3 224 IPR045073 -
Seca12g05920 227 CDD GST_N_Tau 7 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05920 Seca-Chr12 151040160 151042098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05920 4 219 Glutathione S-transferase Gene Family AT2G29420 44.907 5.96e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05920 K00799 - tpra:123914566 327.791