Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05911 ATGGAGAGTACTAAATTCAGCAACCGATATATGAATGAACAAGACGACACTGACATAGCTCAAGAAAACATTGCTGATTCCCCTCCTTCTTCCACAGCGTTTAACATCGAAGGCTTGGTCACTTCCCCCACTTCTTCAGCTAAGAGAAGGCGAGCCATACAGAAAAGGGTGGTGCAAATCCCAATCAAGGAGACAGAAGGGTCAAGGCTAAAAGGAGAGAACAATACCCCACCTTCCGATTCATGGGCATGGAGAAAGTACGGCCAGAAACCCATCAAAGGTTCTCCTTATCCCAGAGGTTACTACAGATGTAGCAGTTCCAAAGGTTGTCCGGCAAGGAAACAAGTGGAGAGGAGCCGCGTGGACCCCACTATGCTCGTCGTAACCTACTCTTCCGAACATAACCACCCATGGCCAGTTTCCAGAAACCATCACTCCAGACCCGCCATAACAACCAAGAAGCCCGAACCTGAACCTGAACCGGTCGAACCGGAGGAGGAAGAGGAGGAGGAGAAGTTTGGGGATCAGCTAGGTGGAGGAGGGGAAGAGCTGTTAGGGTGGTTGGGGGAGATGGAAACGACGTCGTCTGCCGTCCTCGAAAGCCCCATTATGGCGGGATACGATGCTGACGTGGCGTCCATGTTCATGCCCATGAGGGAAGAGGATGAGTCGCTCTTCGCTGACCTCGGGGAGCTGCCGGAATGCTCCACGGTGTTCCGGCAGGGGATGCTTGACGACCGGCGGCGGTTCACGGCGCCGTGGTGTGGGACCACAAGTTGA 780 0.5372 MESTKFSNRYMNEQDDTDIAQENIADSPPSSTAFNIEGLVTSPTSSAKRRRAIQKRVVQIPIKETEGSRLKGENNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTMLVVTYSSEHNHPWPVSRNHHSRPAITTKKPEPEPEPVEPEEEEEEEKFGDQLGGGGEELLGWLGEMETTSSAVLESPIMAGYDADVASMFMPMREEDESLFADLGELPECSTVFRQGMLDDRRRFTAPWCGTTS. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05911 259 ProSiteProfiles WRKY domain profile. 79 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05911 259 SMART WRKY_cls 78 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05911 259 MobiDBLite consensus disorder prediction 64 119 - -
Seca12g05911 259 Gene3D WRKY domain 68 140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g05911 259 MobiDBLite consensus disorder prediction 1 36 - -
Seca12g05911 259 MobiDBLite consensus disorder prediction 17 36 - -
Seca12g05911 259 Pfam WRKY DNA -binding domain 80 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g05911 259 SUPERFAMILY WRKY DNA-binding domain 75 139 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g05911 259 MobiDBLite consensus disorder prediction 134 183 - -
Seca12g05911 259 FunFam WRKY transcription factor 65 55 139 - -
Seca12g05911 259 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 21 237 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05911 Seca-Chr12 150984385 150986235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05911 15 241 WRKY Transcription Factor Family AT1G29280 57.322 3.63e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g05911 WRKY 8.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05911 - - gmx:100127392 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05911 12 150984385 150986235 Seca12g05911 12 150984385 150986235 ECH