Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05897 ATGGATCAGTCAAGAAGCAAAGGCAGTGGTGAGATACTGGATCGTGTTGATGAAGGGGTGGATGCGAATTTGAGCCATTTGGTTGAAAAGGTTGCAATTGATGCAGGAGCTGGACGTAGCTTGGGTGACAGAGTTAGTGTGAGTGGGGAAGATGGGACTTCAGAAGAGATGGGCAATGGTCTCGGATTGAATAAGGAGCTAAAGGAGAGGCTTGAAGAATTTAAGGATCAGGACATGGGTGATCCACAAAAAATCAATGATACATTGCACGGGGTTGATCAAGGAACTAGTTATAATTCAAGTAATGATAATGGGGCAGTACTTGAGACCCGTGTTGTAATAGATTCTTCTGCTCAGATTGAGCATGTTAATGGAGATAATAGGAAATTGGAAGCAAAAGCTAATCAATCAGGGTTGAGCAAGTTAACCATTAAGGCACCAAAAGGGGTGTCTGAGACAGATAAAAATTCATGTGTGATTGATATAAACTGTGGCAGCTGCAAAGGGTTTAGTGAGAATTTGGAAGGTGAAAGGATTTGTAGGATCTGCCATCTGGCCTCTGGGCAACCATTAGAAGCAACTGGTGTTGGCATTCCAAATAGTGGTACTAATAGTACAACTTTGATTGTGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACACAGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTGCGGATGTTACTGATAATGGATTTATGGAAGAGTGGAATGAAAGTAGATTCATCGACGGTGAAGATACCTCAACCCGCAGGTTTGGTGGATGCTGGCGTGGGCAGCCATTCTGTAACTTCTTGATGGCATGCCTGGTAATCGCCTTTGTTCTTCCATGGTTCTTTCGTGTAAATATGTTCTAG 930 0.429 MDQSRSKGSGEILDRVDEGVDANLSHLVEKVAIDAGAGRSLGDRVSVSGEDGTSEEMGNGLGLNKELKERLEEFKDQDMGDPQKINDTLHGVDQGTSYNSSNDNGAVLETRVVIDSSAQIEHVNGDNRKLEAKANQSGLSKLTIKAPKGVSETDKNSCVIDINCGSCKGFSENLEGERICRICHLASGQPLEATGVGIPNSGTNSTTLIVLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVADVTDNGFMEEWNESRFIDGEDTSTRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05897 309 PANTHER ZINC FINGER, RING-CH-TYPE 87 309 - -
Seca12g05897 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 254 IPR013083 -
Seca12g05897 309 SUPERFAMILY RING/U-box 177 245 - -
Seca12g05897 309 Pfam RING-variant domain 204 242 IPR011016 GO:0008270
Seca12g05897 309 SMART ringv_2 179 243 IPR011016 GO:0008270
Seca12g05897 309 ProSiteProfiles Zinc finger RING-CH-type profile. 172 249 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05897 Seca-Chr12 150759844 150763795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05897 160 308 C3H Transcription Factor Family AT5G05830 39.623 7.10e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05897 - - gmx:100791129 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05897 12 150759844 150763795 Seca12g05897 12 150759844 150763795 ECH