Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05893 ATGAAACCCTTTTGCAGATTCTTGATTCTTCTAGCGCTGTTTTCTCTCGCAGAATCCTCATGCAACAGTGGAGACCAGGCCTTGGTGTCAAAGGCTTTCAAATCCGTCTCTGGCTTCAAAGCCTCCACCTTGTTCCAAACAAGAGGTTCTAACTGTTCAGAGCCTCACATCAGCAAAATAGTCCTTCCATCCAAAAATCTAAGCGGGACAATTTCATGGGGTTATCTGAGAAACATGTCCAACTTACAGGTTCTTGATCTCTCTGGGAATTCCCTGGTAGGCCATGTGCCAAGCTGGTTATGGTCAAGTTCATCCTTATTAGAAGTAAATCTCTCAAGTAACAGGTTTGGAGGGAGCATTATTATATCAGAAAACACCTCGTTTTCATCCATTCAAATGCTCAATCTCTCCCACAACAGGTTCACCAATTCAGTTCAACTCTCTGGCTTCCCAAACCTAAAAAGCCTCGACCTTTCTCACAACAAACTAGGAACACTCCCTTCCGGGTTTCAAAACCTCACCAAGCTACAACACCTTGACCTCTCAAGCTGCAATCTCAAAGGAAATATAAAACCCATTTCTTCCTTACACTCACTTCACTACTTAGACTTATCAAACAACTCCTTAACTGGTACTTTTCCTTCTGATTTCCCTCCCCTGAACATCCTCCAATTCTTGAACATCTCATACAATAACTTCAACTCATCAATCAGCTTAAACAAGTTGAATCAATTCAGCAAATCATCTTTCATCCACGCTGGCAACAACTTCACCTACAACAACAACAAAACCAAAACCCCACCAACACCACCATTCCAACCCCACATAGGAAAACAAGCAATTCATCAAAAACAATCCAAAACACTGATCCCTGCAGTGTGTTCTGCAATATCAGGACTTGTCCTCGTTCTTCTGTCCATTTGGGTACTCCGCATTATTCACAAGAAGAGAAAGCAACGTTCCAAGAGGAACAAATGGGCAATCTCCTTACCTGTCCCACAAGGGATGAACATGATGACAACAAAGTTTGAGAAATCAGGGCCGTTCTCTTTTGAGACTGAATCAGGGTCAACGTGGGTGGCTGACCTGAAGGAACCATCTTCTGCACCTGTGGTGATGTTCGAGAAGCCATTGATGAATCTCACCTTCAAGGACCTCATCGTTGCCACGTCACACTTCGGCAAGGACTCTCTGCTCGCAGAGGGAAGGTGTGGGCCAGTGTACAGGGCTGTGCTACCAGGTGAACTCCACGTGGCAATCAAGGTCCTGGAACATGCCAGAGACGTTGATCGTGATGACTCTGTCACTATGTTCGTTGACCTCTCAAAACTTAAGCACCCCAACTTGTTGCCCCTCTCCGGTTACTGCATTGCAGGTAAGGAGAAGCTGGTGCTGTACGAGTATATGGCAAATGGCGATTTAGGAAGGTGGCTACACGAGCTTCCAGCAGGGGATACCAACGTGGAAGATTGGACTGGCGACACGTGGGAGATCCAAAACGGCGTCGTCGATGGATCCCCTGAAAAGATGGGGTGGCTGACACGACACCGTATCGCAGTGGGTATAGCGCGTGGGCTCGCGTATCTCCACCACGCGGGTTCCAAACCCGTCGTGCACGGACACCTCGTAACCTCCAACATTTTACTCGCCGACGATTTTGAGCCACGGATCGCTGATTTCGGGTTGCGAATCGACCCGAGCCCAAATGGAGGAACCGAAGCTGACGTGTACTGTTTCGGGGTGGTTCTCATGGAGCTGCTGACGGGGAGGGCCGGCACGGCGGAGACGGTGGTTGCGGTTAGAAAAGCGGTGAGGGAGGGGCAGGGCGTTAGGGTGCTGGACGAGAGGCTGCAACTCGGTGGTGACTCAGTGGTGAGTCAGATGGTTGAAAGCCTCCGAGTCGCTTTCCTGTGCACTGCCGAGTCATCTTCCAAAAGACCCACAATGCGTCAGGTTTTGGGTTTGCTCAAAGACATTCGTCCTCATCAACGACTCGTCCCGAGTTGA 2007 0.4873 MKPFCRFLILLALFSLAESSCNSGDQALVSKAFKSVSGFKASTLFQTRGSNCSEPHISKIVLPSKNLSGTISWGYLRNMSNLQVLDLSGNSLVGHVPSWLWSSSSLLEVNLSSNRFGGSIIISENTSFSSIQMLNLSHNRFTNSVQLSGFPNLKSLDLSHNKLGTLPSGFQNLTKLQHLDLSSCNLKGNIKPISSLHSLHYLDLSNNSLTGTFPSDFPPLNILQFLNISYNNFNSSISLNKLNQFSKSSFIHAGNNFTYNNNKTKTPPTPPFQPHIGKQAIHQKQSKTLIPAVCSAISGLVLVLLSIWVLRIIHKKRKQRSKRNKWAISLPVPQGMNMMTTKFEKSGPFSFETESGSTWVADLKEPSSAPVVMFEKPLMNLTFKDLIVATSHFGKDSLLAEGRCGPVYRAVLPGELHVAIKVLEHARDVDRDDSVTMFVDLSKLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPAGDTNVEDWTGDTWEIQNGVVDGSPEKMGWLTRHRIAVGIARGLAYLHHAGSKPVVHGHLVTSNILLADDFEPRIADFGLRIDPSPNGGTEADVYCFGVVLMELLTGRAGTAETVVAVRKAVREGQGVRVLDERLQLGGDSVVSQMVESLRVAFLCTAESSSKRPTMRQVLGLLKDIRPHQRLVPS. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05893 668 FunFam Putative LRR receptor-like serine/threonine-protein kinase 354 468 - -
Seca12g05893 668 ProSiteProfiles Leucine-rich repeat profile. 152 174 IPR001611 GO:0005515
Seca12g05893 668 Pfam Leucine rich repeat 56 116 IPR001611 GO:0005515
Seca12g05893 668 Pfam Leucine rich repeat 130 186 IPR001611 GO:0005515
Seca12g05893 668 Pfam Protein tyrosine and serine/threonine kinase 397 564 IPR001245 GO:0004672|GO:0006468
Seca12g05893 668 SUPERFAMILY Protein kinase-like (PK-like) 370 660 IPR011009 -
Seca12g05893 668 PRINTS Leucine-rich repeat signature 153 166 - -
Seca12g05893 668 PRINTS Leucine-rich repeat signature 196 209 - -
Seca12g05893 668 Pfam Leucine Rich Repeat 198 217 IPR001611 GO:0005515
Seca12g05893 668 SMART LRR_typ_2 150 172 IPR003591 -
Seca12g05893 668 SMART LRR_typ_2 196 219 IPR003591 -
Seca12g05893 668 SMART LRR_typ_2 79 103 IPR003591 -
Seca12g05893 668 Gene3D Transferase(Phosphotransferase) domain 1 469 569 - -
Seca12g05893 668 Gene3D Phosphorylase Kinase; domain 1 353 468 - -
Seca12g05893 668 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 572 660 - -
Seca12g05893 668 FunFam Calmodulin-binding receptor kinase CaMRLK 129 239 - -
Seca12g05893 668 Gene3D Ribonuclease Inhibitor 124 269 IPR032675 -
Seca12g05893 668 Gene3D Ribonuclease Inhibitor 18 123 IPR032675 -
Seca12g05893 668 Gene3D Transferase(Phosphotransferase) domain 1 570 665 - -
Seca12g05893 668 ProSiteProfiles Protein kinase domain profile. 393 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05893 668 SUPERFAMILY L domain-like 52 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05893 Seca-Chr12 150688721 150691764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05893 59 659 Receptor kinase-like Gene Family AT5G07280 32.081 2.29e-72 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Seca12g05893 PK_Tyr_Ser-Thr 2.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05893 - - gmx:100788556 962.6