Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05889 ATGTCAGAAGAATATAATGAGAGTAGTACTCATGAGAATGAGAGGGAAGTGCAGGCTGATGACAGTTCAATGGGATCTTCTGGCCAGAAGTGTTCATCCTTTGACTTGAATGAAGAAGCTAGTAGTGAAGATAACAATGAGAATGATAATGAGGCATGTGATGAACTCATAGGTGATGAGGAGGGATTTGAGAAAGGGAATATTGAGGATGAAGGTACTTCAAAGAACACAACAAGAGATCAAGGAAATGAAAGAAGAAGTGGTGTGAGGCAATATGTTAGATCAAAGATGCCTAGGCTTCGGTGGACTCCTGACCTTCATCACTCCTTTGTTCATGCTGTTGAAAGGCTTGGTGGTCAAGAAAGAGCAACACCCAAGTTGGTGCTTCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTACCGAAGCAAGAAACTTGACGAGGCTGGGCAAGTACTAAGTCGAACATACAGATCAACCCATGAACTAGGTCGTATTTCTCATGGAGCCCATCATCAGTCCATGAGTCCTCATCATCAACATTTCAAGATGGGAAATGGTGGAATTATTCTAACAAGTAACTACAACGAGCATGGTTATTTCCAAGGTCTCATGCATCCTTCCTCCTTATCACATTCACATTCAAAGCCCATTGATTCAAGGCATCAACAATGGTACTCTAATCATCAACCTTTTAGAAGACCAAGTTACCTAAGCAATGAAGTTGTCCCCTCAACTTCAAACCAAATTCAACTAATGGATGCTAGCAGACTTGCACCCATGAGACCAAGCCAATTTATTGAAGAGAAAAGGTGGCCTCCATTAGAAACAATGAACAATCACCATTGGAAGAAAAACTACACAACACAATTTGGCAGACCAGCTGAGGTGATCAGTTTTGGAAACAACACAAGAATCAGGGAACATCTATCAAACCCAGATGAGCATTCCAACAGTTTAAAGCTAGATTTTGATCCTCCATTTCGGATTAAGTTGAATCAAGAAAATTTGGAGACAGAGAAACAAATGGTGCCTGATTTGCAACTGAGTCTAAGTCAGAAAAATGGCAACAAGGATGGCAAGAGTGATAATGGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTCTCTTAG 1161 0.4109 MSEEYNESSTHENEREVQADDSSMGSSGQKCSSFDLNEEASSEDNNENDNEACDELIGDEEGFEKGNIEDEGTSKNTTRDQGNERRSGVRQYVRSKMPRLRWTPDLHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSRTYRSTHELGRISHGAHHQSMSPHHQHFKMGNGGIILTSNYNEHGYFQGLMHPSSLSHSHSKPIDSRHQQWYSNHQPFRRPSYLSNEVVPSTSNQIQLMDASRLAPMRPSQFIEEKRWPPLETMNNHHWKKNYTTQFGRPAEVISFGNNTRIREHLSNPDEHSNSLKLDFDPPFRIKLNQENLETEKQMVPDLQLSLSQKNGNKDGKSDNGRETQEINTKLSLS. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05889 386 Gene3D - 97 154 - -
Seca12g05889 386 MobiDBLite consensus disorder prediction 40 58 - -
Seca12g05889 386 MobiDBLite consensus disorder prediction 347 366 - -
Seca12g05889 386 MobiDBLite consensus disorder prediction 59 91 - -
Seca12g05889 386 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 153 IPR006447 GO:0003677
Seca12g05889 386 MobiDBLite consensus disorder prediction 1 91 - -
Seca12g05889 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 154 IPR017930 -
Seca12g05889 386 FunFam Myb family transcription factor 96 154 - -
Seca12g05889 386 MobiDBLite consensus disorder prediction 1 19 - -
Seca12g05889 386 Pfam Myb-like DNA-binding domain 100 150 IPR001005 -
Seca12g05889 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 71 219 IPR046955 GO:0003700
Seca12g05889 386 MobiDBLite consensus disorder prediction 20 39 - -
Seca12g05889 386 MobiDBLite consensus disorder prediction 347 386 - -
Seca12g05889 386 SUPERFAMILY Homeodomain-like 96 152 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05889 Seca-Chr12 150635873 150640180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05889 89 159 G2-like Transcription Factor Family AT2G42660 77.465 1.76e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca12g05889 Myb_DNA-binding 7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05889 - - gmx:100808625 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05889 12 150635873 150640180 Seca12g05889 12 150635873 150640180 ECH
Seca6g04757 6 115075890 115080634 Seca12g05889 12 150635873 150640180 ECH
Seca12g05889 12 150635873 150640180 Seca6g04757 6 115075890 115080634 PCT