Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05887 ATGGAAATTAAATGGGAAACATTTGGATTATGGTTCAGAATTTATGTTGGATTGATTTCTCTGTGGGGAATTCAACAGTGTTGGTCTCTTAATGATGAAGGGTTGGCTTTGATGGAATTTAGGGGAAGAATAACTTCTGATCCTTATGGTGCTCTGGCAAATTGGAATCCAAATGATTGCAACCCTTGCAAGTGGTCAGGTGTTCATTGTGTTGACGGTAAAGTGCAAATGCTGGACCTAACTGGGCTATCATTGGAAGGGACATTGACACCTCATCTTGGGAAACTTAATCACTTGAAATCTCTTGTTTTGTGCAAGAACAATTTTTCTGGGACCATTCCCAAAGAACTTGGAGATCTAGACAAGCTGGAGTTGTTGGATTTACGGGAAAATAGCTTAACTGGAAGTATCCCAGCAGAAATTGGCAGGAAATCATTGTTAAAACAATTGTTGGATTGTGACAATAAAATTGAAGGCTGTGATGCTCAAGTGCTCAGAAAGATCAGATTGCTCTCTAAATCACTATTTGTTGACAATTATTCATCAACTCTGACAAGTTCATTTCACTGCAAGAATAGAAAGTTTGTTCACTGTGCGTGGCATAGAGAATTCAAGCAATGGAGCAAGGCAGAGTCATTGGCTATTCCAATTAAAGGAGCAGTTAAAAAATACCTTAATGCCCTAGTGCTGCCACTGTTCAAGCCAGGAAAGGCTGCCCCTCATGGCTATGTAGAGAACTACCTTGACAATCTGCCTAATTCTGATGAGTCAGAGATTGTCCAGAATGTATCAAATCTAGTCAATTCTGCACGTCGTAAGTTACTTGATCAATCCAGCAACCTTGCAGCTGCACCTTATAGTGGTGGGCCTACTACACAGATCAGTTCTGTTCCAACTACCCTGAGTAGTGGAGCTTTCCCAGCTGTGCCAGATGTCAATAAAAAACAAAATCAGTCACCTGCACCACTTCCTTCATCTTCTAATTCTCCAGATGATACTTCTGATCAGACAAGTCAACAAAATTCAGCTAATGGTGCTCCAGGAAAATTGTGGAAGTATATTATTATTATCTTAGGTGTGGCTGTCTTGGTCATTGTTATTCTGGTCATACTTTGCATATGGCGAAAACGAGCAGCAAAAGTAATAAAGCCCTGGAAAACAGGAATAAGTGGACAATTGCAGAAAGCATTTGTAACAGGAGTCCCCAAGTTGAATAGAGCAGAGTTGGAGACAGCCTGTGAAGATTTCAGCAATATCATTAATAGTTTTGATGAGTGCACCATATACAAAGGAACACTGTCAAGTGGAGTCGAGATTGCTGTTGATTCTACTATGGTTACTTCTGCCCAGGAGTGGTCAAAGAACATGGAGATGGCCTATCGGAAAAAGATTGATACTCTGTCTCGTGTTAACCATAAGAATTTTACCAATCTTATTGGGTACTGTGATGAAGAAGAACCATTTACAAGGATGATGGTGTTTGAGTATGCTCCAAATGGAAGCGTTTTTGAGCATCTGCACGTCAAGGAAGTTGAACATCTTGATTGGAGTGCAAGAATGAGAGTTATTATGGGCACGGCTTATTGTCTTCAGTACATGCACCATGATCTGAATCCACCAGTTGCTCATTCCAACCTTAATTCACTTTCTATATTGTTAACAGATGACTATGCAGCTAAGATTTCAGAGATCAGTTTTGGCACCAAAGTACTATCACCAGGCAACACAACTGGAGATGAATCAAAGAAATCTGAGTTGCCACCTCCTGCTGATCCTGAAACTGATGTCTATAACTTCGGAGTATTGTTGCTTGAAATCATTTCTGGGAAACTACCTTACTCTGAAGAACAAGGCCACCTTGTGAACTGGGCTGCTGAGTACTTGAATGATAAGCAAAGCATCAACTATTTGATAGATCCCACACTGAAGTCCTTCAAAGACAATGAACTTGGTGTCATCTGTGAGGTGATCCAAGATTGTCTTCAATCTGATACAAGGTTAAGGCCATCAATGAAAGACATAACTTCCAAATTGAGGGAAGTGCTTTCTATATCACCTGAGCAAGCAGTCCCAAGACTTTCTCCACTGTGGTGGGCTGAATTGGAGATCTTGTCTGTGGAGGCCCCTTGA 2130 0.4085 MEIKWETFGLWFRIYVGLISLWGIQQCWSLNDEGLALMEFRGRITSDPYGALANWNPNDCNPCKWSGVHCVDGKVQMLDLTGLSLEGTLTPHLGKLNHLKSLVLCKNNFSGTIPKELGDLDKLELLDLRENSLTGSIPAEIGRKSLLKQLLDCDNKIEGCDAQVLRKIRLLSKSLFVDNYSSTLTSSFHCKNRKFVHCAWHREFKQWSKAESLAIPIKGAVKKYLNALVLPLFKPGKAAPHGYVENYLDNLPNSDESEIVQNVSNLVNSARRKLLDQSSNLAAAPYSGGPTTQISSVPTTLSSGAFPAVPDVNKKQNQSPAPLPSSSNSPDDTSDQTSQQNSANGAPGKLWKYIIIILGVAVLVIVILVILCIWRKRAAKVIKPWKTGISGQLQKAFVTGVPKLNRAELETACEDFSNIINSFDECTIYKGTLSSGVEIAVDSTMVTSAQEWSKNMEMAYRKKIDTLSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGSVFEHLHVKEVEHLDWSARMRVIMGTAYCLQYMHHDLNPPVAHSNLNSLSILLTDDYAAKISEISFGTKVLSPGNTTGDESKKSELPPPADPETDVYNFGVLLLEIISGKLPYSEEQGHLVNWAAEYLNDKQSINYLIDPTLKSFKDNELGVICEVIQDCLQSDTRLRPSMKDITSKLREVLSISPEQAVPRLSPLWWAELEILSVEAP. 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05887 709 MobiDBLite consensus disorder prediction 572 591 - -
Seca12g05887 709 FunFam Nuclear pore complex protein NUP107 30 189 - -
Seca12g05887 709 SUPERFAMILY L domain-like 28 184 - -
Seca12g05887 709 Gene3D Transferase(Phosphotransferase) domain 1 497 690 - -
Seca12g05887 709 Pfam Protein tyrosine and serine/threonine kinase 427 678 IPR001245 GO:0004672|GO:0006468
Seca12g05887 709 PANTHER PROTEIN MALE DISCOVERER 2 16 707 - -
Seca12g05887 709 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Seca12g05887 709 Gene3D Phosphorylase Kinase; domain 1 390 496 - -
Seca12g05887 709 MobiDBLite consensus disorder prediction 308 344 - -
Seca12g05887 709 Gene3D Ribonuclease Inhibitor 29 220 IPR032675 -
Seca12g05887 709 ProSiteProfiles Protein kinase domain profile. 379 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05887 709 SUPERFAMILY Protein kinase-like (PK-like) 402 678 IPR011009 -
Seca12g05887 709 MobiDBLite consensus disorder prediction 312 344 - -
Seca12g05887 709 FunFam Inactive receptor-like serine/threonine-protein kinase 388 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05887 Seca-Chr12 150611818 150618609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05887 85 681 Receptor kinase-like Gene Family AT5G56040 26.923 1.57e-46 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Seca12g05887 PK_Tyr_Ser-Thr 1.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05887 - - gmx:100808098 1035.79