LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g05886	ATGGCTGAGGTGGCTCCCAAGAAGAGCAACACCGAAGCCTCCACCTCCAACTCCATTAACAAAAAGGTAAACACAAATCTTCTATTGGGTAGGTTCGAGCTAGGGAAGCTCCTTGGCCATGGAACCTTCGCGAAGGTCCACCATGCCCGGAACATCAAAACCGGTGAAGGGGTAGCCATAAAGATCATAAACAAAGAGAAGATCCTAAAGACTGGTTTGGTGTCTCACATCAAACGCGAGATCTCCATCCTCCGCCGTGTCCGCCACCCAAACATTGTCCAACTCTTCGAAGTCATGGCCACAAAGACCAAGATCTACTTCGTCATGGAGTATGTTCGTGGTGGTGAGCTCTTCAACAAGGTTGCTAAAGGTAGATTGAAGGAAGAAGTTGCAAGGAAATACTTTCAGCAATTGATTTGTGCTGTGGAGTTTTGTCATGCCAGAGGGGTGTTCCATAGGGATCTAAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTAACCTTAAAGTTTCTGACTTTGGACTCAGTGCTGTGTCTGATCAGATTAGGCAAGATGGGTTGTTCCACACATTTTGTGGGACACCTGCTTATGTTGCTCCTGAGGTTTTGGCTAGGAAAGGGTATGATGGTGCTAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTGCCTTTTCATGATAGAAATATTATGGCTATGTATAAGAAGATTTACAAGGGTGAGTTTAGGTGTCCAAGGTGGTTCTCCCCTGAACTTTCTAGGCTTCTCACTAGGCTTCTTGATACCAATCCTCAAACCAGGATTTCCATTCCAGAGATCATGGAGAATCGGTGGTTTAAGCAGGATTTCAAACAGATAAAATTCTATGTTGAGGATGATAAGGTGCATCATGATGATTATGATGAATTATCTGACTCTGAGGTTGAGACTAGAAGGAGGAAAATTCACAATAATGCTTCATTGCCTAGACCTGCAAGTTTGAATGCATTTGACATCATATCATTTTCTCAGGGTTTTGATCTTTCTGGATTGTTTGAGGAAAAGGGTGATGAGGCAAGGTTTGTGACTGGTGCCTCAGTGTCTAAGATTATATCAAAATTGGAGGAAATTGCTCAGTTGGTTAGCTTTAGTGTGAGGAAGAAAGATTGTAGGGTCAGCTTGGAGGGTTCTAGAGAAGGGGTGAAAGGGCCATTGACAATTGCTGCAGAGATATTTGAATTGACACCTTCTTTGGTGGTGGTGGAGGTGAAGAAGAAAGGAGGTGATAAAGCAGAGTATGAGAAATTTTGTAACTCTGAATTGAAACCTGCTTTGGAGAGTTTAATGATGGAGGAATCTGCAACTTCTTCATGCCAAACTACACCTGCTGAACCTTCTCAACCACGTTCACTTTCTGACTCTACCCTCAATATACCTTCAGATACTGAACCTTTGCACTTAGATACCTGA	1470	0.4286	MAEVAPKKSNTEASTSNSINKKVNTNLLLGRFELGKLLGHGTFAKVHHARNIKTGEGVAIKIINKEKILKTGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLICAVEFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDIWSCGVVLFVLMAGYLPFHDRNIMAMYKKIYKGEFRCPRWFSPELSRLLTRLLDTNPQTRISIPEIMENRWFKQDFKQIKFYVEDDKVHHDDYDELSDSEVETRRRKIHNNASLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVTGASVSKIISKLEEIAQLVSFSVRKKDCRVSLEGSREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDKAEYEKFCNSELKPALESLMMEESATSSCQTTPAEPSQPRSLSDSTLNIPSDTEPLHLDT.	490

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g05886	489	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	18	443	-	-
	Seca12g05886	489	SUPERFAMILY	Protein kinase-like (PK-like)	28	322	IPR011009	-
	Seca12g05886	489	CDD	CIPK_C	335	445	-	-
	Seca12g05886	489	MobiDBLite	consensus disorder prediction	450	482	-	-
	Seca12g05886	489	ProSitePatterns	Protein kinases ATP-binding region signature.	38	61	IPR017441	GO:0005524
	Seca12g05886	489	MobiDBLite	consensus disorder prediction	449	489	-	-
	Seca12g05886	489	FunFam	Non-specific serine/threonine protein kinase	331	449	-	-
	Seca12g05886	489	FunFam	Non-specific serine/threonine protein kinase	21	324	-	-
	Seca12g05886	489	Gene3D	Transferase(Phosphotransferase) domain 1	22	335	-	-
	Seca12g05886	489	SMART	serkin_6	32	286	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g05886	489	Pfam	Protein kinase domain	33	286	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g05886	489	ProSiteProfiles	Protein kinase domain profile.	32	286	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g05886	489	ProSiteProfiles	NAF domain profile.	329	353	IPR018451	GO:0007165
	Seca12g05886	489	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	150	162	IPR008271	GO:0004672\|GO:0006468
	Seca12g05886	489	CDD	STKc_SnRK3	31	285	-	-
	Seca12g05886	489	FunFam	Non-specific serine/threonine protein kinase	23	111	-	-
	Seca12g05886	489	Pfam	NAF domain	331	387	IPR004041	GO:0007165
	Seca12g05886	489	Gene3D	Kinase associated domain 1, KA1	336	451	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g05886	Seca-Chr12	150595350	150596840	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g05886	27	483	CBL-interacting serine-threonine protein kinases	AT4G18700	76.221	0.0	732

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Seca12g05886		Pkinase	7.1e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g05886	-		-	gmx:100807567	792.727