LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g05874	ATGGAGCATGATAAAAATCAATCACTTGAATTTGATGAGCCTAAAGACATTTTTCTTGGTCAAGTTGTGCATAGCCAAGATGAAGCTTATAACTTATACCAAGCACGTGCCTTCAAAATGGGGTTTAGTGTAAGAAAGGGGAAGGAGTTGTATTATGATAGTGAGAAAAAGTTCAAACGGTTTAAAAATAATGAAGCTGAAGGTGAAGTGGCTTATGAAAGAGCAAATTCAAGAACGGGTTGTAAAGCAATGGTGCGATTTAATGTGAGTAAGGAAGGAGTTTGGAAAATTACACAGTTGGTACTCAATCACAATCACGAGTTTGTGCCACCAGAGCAAAGACACTTGTTACGTTCTATGAGAAATGTATCTACTGTCAAAGGGGGCGTGATAAAGTCCATGGTGAATGCTGGTATAAAAGTTACAAAGATTTGGAGTTATTTAGGAGAGGAAGTTGGTGGTTTCGATAAACTTGGTTTAACGGTGAAAGATATGCAAAATTATGTCTACACTGAAAAGTTGAAATTGATTGAAGCCGAGGATGCTCAATCATTAGTGAATCTCTTGCGGAGTAGACAAGCACAAGATCCAATGTTCTACTACAGTGTACAATTAGACCAAGAGTCACGCCTCACAAATGTGTTCTGGAGAGATGGCAAATCGAAAGTTGATTATGATTGCTTTGGGGATGTTGTGGTTTTTTATACCACTTATCGTACTAATAAATACAACTTGATTTGTGCCCCTTTTGTTGGTGTAAATCATCATTGGCAAAATGTCATGTTTGGTTGTGCTCTGTTGTTTGATGAAACTGCAGTTTCTTTTAATTGGTTGTTTAAAGTGTTTTTGGAGAGTATGGGAAACCAACATCCAAAAACAATTTTTACAGATCAAGATGCAGCCATGGCCAAAGCAATCGGACAGGTAATGCCAAATACATGTCATCGATTATGCTTATGGCATATAGCAAAAAATGCTCCTTCTTATTTTGGTGCTCTCAATTATGATTCTAAGTTTCAAAGCCTATTCCAAAGATGCATGACAAGTTGCAATTCAGAAGAAGAGTTTGAAAGCACTTGGCAAAAGATGATGAATGAGTACAAGCTTCATGATCATGTTTGGTTGAGCAATATGTACAAAATTCGTCACAAGTGA	1155	0.3706	MEHDKNQSLEFDEPKDIFLGQVVHSQDEAYNLYQARAFKMGFSVRKGKELYYDSEKKFKRFKNNEAEGEVAYERANSRTGCKAMVRFNVSKEGVWKITQLVLNHNHEFVPPEQRHLLRSMRNVSTVKGGVIKSMVNAGIKVTKIWSYLGEEVGGFDKLGLTVKDMQNYVYTEKLKLIEAEDAQSLVNLLRSRQAQDPMFYYSVQLDQESRLTNVFWRDGKSKVDYDCFGDVVVFYTTYRTNKYNLICAPFVGVNHHWQNVMFGCALLFDETAVSFNWLFKVFLESMGNQHPKTIFTDQDAAMAKAIGQVMPNTCHRLCLWHIAKNAPSYFGALNYDSKFQSLFQRCMTSCNSEEEFESTWQKMMNEYKLHDHVWLSNMYKIRHK.	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g05874	384	Pfam	FAR1 DNA-binding domain	32	110	IPR004330	-
	Seca12g05874	384	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	8	384	IPR031052	GO:0006355
	Seca12g05874	384	Pfam	MULE transposase domain	231	325	IPR018289	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g05874	Seca-Chr12	150444720	150445904	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca12g05874		MULE	1e-25	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g05874	-		-	tpra:123905334	620.928