Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05869 ATGGCTGTCTGCCTGAAAAATCTCATCCCTTTCTTCTGTTTCTTCACTGTGTTTGCAGAAACTATCACTTCCCATGACCAATGCAAAGAATCAAGCTGTGATAGCATCCATGGACCATCCATCAGATTCCCCTTCAGACTAAGAGGAAGACAACCACAATGGTGTGGCTATAATAATCCTTCGTTTGAACTATACTGCACCGATACCAACCACACAGTGCTTGAACTCCCATTCTCTGTTAAGGCTTTAGTCAAAACCATAGACTACACATCACAGCTCATAACTGTATCTTATCCTGAAGTTTGCCTTAACAAACAAATTGCAAATTTTGATATATCAACCTCTCCTTTTATGTTCACCCATGACTTTGAACTCAACGAATATGCATTATTCAATTGTTCAGGGTCAGGGATGTCTCACAGAAACACAGATAACAGGGATATAATGACATCTGGAAACTTTTCTTGCCTCAATGAACCAGGCTTTGAAGTTATAGCAGTAAATTCCAGATCATCAATAATCTGGACACCCTTATTGTCTTGCACTAGAATCCAAAGCCTTGTTTTATTGCCTAGTTCTTTGTTTAATAACGTTGATGCTGGTTTAAACTGGTTCCAACCAGACTGCAAAAGCTGCGAAAGAGAAGGTGGGCAATGCAAGGCCAAAGAAAACAAATCTAAACACCAATTCGAATGTATAGGCATCCCCCCTACAGGTATGATTTCTTCTGTATACTTCCATAGTGGAATCCTAGGCCCTTTTTCGCTGATATTTGTTGGAGTCTTAGCATATTGTATCTATGTAGCTGTCATTGAAAGGAAGAGTTATAAAAGAATCAAAAAGTTTCTGGAGGATTATAAAGCACTTAAGCCTGCCAGATACTCTTATGCTGATATAAAGAGAATCACAAATCAATTTAAGGAAGAACTGGGGCAGGGAGCTTATGGATCTGTCTTCAAAGGAAAGCTATCAAATGAAATTCAGGTCGCTGTTAAGGTCCTAAACACTACAACTGGGAATGGCCAAGAGTTCATCAATGAAATGGAAGCAATGTGTCAAATTCACCATGTCAATGTGGTTCGCTTGGTTGGCTTTTGTGCAGATGGACTCAGGAGAGCTTTGGTGTATGAATTCTTACCAAATGGTTCATTGCAGAAATTCATATCATCTGCAGACACTAAGGATGTCTTTCTAAGTTGGGAAAGGCTACAAGATATTGCTCTCGGTATAGCCAAGGGAATTGAGTATCTTCACCAAGGTTGTGATAAAAGAATTCTCCATTTTGATATCAAACCTCATAATGTATTGCTAGATGACAATTTCACACCCAAAATCTCTGATTTTGGTTTGGCCAAGCTTTGTTCCAAGGACCAAAGTATTGTGTCAATGACCACAGCTAGGGGCACTTTGGGCTACATTGCGCCAGAAGTATTTTCTAGGAACTTTGGCAATGTATCCTATAAGTCAGACGTTTATAGTTTTGGGATGCTGCTGCTTGAAATGGTAGGAGGAAGGAAAATAACTGATGTCACAGCAGAAAATAATAGCCAAGTCTATTATCCACAGTGGATATATAACCTTCTAGAGAACAATGAAGACATACAAATCCATATAGAAGGAGAAGAAGACACTAGAGTTGCAAAGAAGCTATCAATTGTGGGACTGTGGTGCATTCAGTGGCACCCAGTAAATCGTCCAACCATGAAAGCTGTGGTTCAAATGCTTGAAGGAAATGGAGAGAAGTTGGAGATGCCTCCTAATCCTTTTGCCTCTACATCTGCAAGTAGAGCAAGTTCTAGATTTGGTACTGGACGTCTGAACCTAGAGCTAGATGTTATCTCAGAAATAGAGTGA 1854 0.3975 MAVCLKNLIPFFCFFTVFAETITSHDQCKESSCDSIHGPSIRFPFRLRGRQPQWCGYNNPSFELYCTDTNHTVLELPFSVKALVKTIDYTSQLITVSYPEVCLNKQIANFDISTSPFMFTHDFELNEYALFNCSGSGMSHRNTDNRDIMTSGNFSCLNEPGFEVIAVNSRSSIIWTPLLSCTRIQSLVLLPSSLFNNVDAGLNWFQPDCKSCEREGGQCKAKENKSKHQFECIGIPPTGMISSVYFHSGILGPFSLIFVGVLAYCIYVAVIERKSYKRIKKFLEDYKALKPARYSYADIKRITNQFKEELGQGAYGSVFKGKLSNEIQVAVKVLNTTTGNGQEFINEMEAMCQIHHVNVVRLVGFCADGLRRALVYEFLPNGSLQKFISSADTKDVFLSWERLQDIALGIAKGIEYLHQGCDKRILHFDIKPHNVLLDDNFTPKISDFGLAKLCSKDQSIVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSFGMLLLEMVGGRKITDVTAENNSQVYYPQWIYNLLENNEDIQIHIEGEEDTRVAKKLSIVGLWCIQWHPVNRPTMKAVVQMLEGNGEKLEMPPNPFASTSASRASSRFGTGRLNLELDVISEIE. 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05869 617 Gene3D Transferase(Phosphotransferase) domain 1 379 584 - -
Seca12g05869 617 CDD STKc_IRAK 310 577 - -
Seca12g05869 617 SMART serkin_6 304 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05869 617 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Seca12g05869 617 ProSiteProfiles Protein kinase domain profile. 304 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05869 617 PANTHER RUST RESISTANCE KINASE LR10-RELATED 276 593 IPR045874 GO:0004672
Seca12g05869 617 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Seca12g05869 617 FunFam S-receptor-like serine/threonine-protein kinase 272 378 - -
Seca12g05869 617 FunFam PR5-like receptor kinase 379 587 - -
Seca12g05869 617 SUPERFAMILY Protein kinase-like (PK-like) 288 576 IPR011009 -
Seca12g05869 617 Pfam Protein kinase domain 306 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05869 617 Gene3D Phosphorylase Kinase; domain 1 277 378 - -
Seca12g05869 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05869 Seca-Chr12 150413798 150416223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05869 24 588 Receptor kinase-like Gene Family AT1G66910 38.808 1.09e-115 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca12g05869 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05869 - - tpra:123914140 1003.82