Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05868 ATGTGTGTTTCGTGTGGGGGACTCATCGCTTTCGCTACTTTGTTTGTGTGCTCCTACTATGCTCTTGTTCGTAACGGTTTCTATTACGAATACGAATGTTTCGTCCCGTCGTGGCGACCTTGTGGAATCATATTCAACGAGACTTTTTCATCATCATCATCATATTATGAGGGAGGGAGATGCGTGAATCCCAGGTACGAAGTGATATGTGAAAACAATAAACCAGTGATCTACTTCAACTATGACACTAGTCATAACATAGACGCCATTATAGCAGCGGCTAATTCCTCCACGGCCTTCCGTTACATCACCACCGGAGTTAATCCCAATGATAATTGCTCTTTCATCAATTTGCACTCCATGCCTTATGAAAACATCTCCTTCTTCACCAGTTCTTATGACGAAAATTTAGCAGTTCTGAGATGTGAAAGACCAGTAAATGTTGATGGCTATCGGGACATCTCAAAGCACTGTGGCCATGCCGATGAGGAAAAGCATTATTATTCATATATGCTTTTGCCTGACGACAGCAGAAGTGACGTTGCATACATTGCAGAGTCTTGCAGCGTAGAGATGAAAGTAATTATGAGAACGGAAGAAGCGATTAGGTGTGGTAGAAACTGTTCATATCCAGAGATTCAGAGTGAGTATGTGAATGGGATTGAGCTTCGGTGGCAACCAATACGCTGGCAACCGGAAAAGGAAACATGGCAACCGCAACCCCACTGCATCCCGGACGGGAACCTATACGCCGTATTAAACAATTTCATTCAAATCGGTTACTTACTGTTTCTATTGGTGATTGGAAAATTTGTTCTCGGGTCACCCTTTGTGGTTATCTTCTTGATATATAAATGGAGAAAAAGGCATTTGTCCGGAAATGACCCGGTAGAAGATTTTATCCAGAGTCACAATAATTTCATGCCCATCAGGTACTCTTACTCTCAAATAAAAAGGATGACCAAATCTTTCAAGCATAAGTTAGGTGAGGGAGGCTATGGTTCTGTCTATAAAGGGGAGCTTCAAAGCAAACGCATAGTAGCTGTTAAGGTATTGACCAAGTCCCAAACCAATGGACAGGAATTCATCAGTGAAGTTGCAACCATTGGAAGAATTCGTCATGTCAATGTGGTGCAGCTCATTGGATTTTGTGCTGAGAGAACAAAACAAGCTCTGGTGTATGAGTTCATGCCTAATGGGTCTCTTGATAAACACACATTTTCACAAGAGCAAGGAAGCTCATCATTAAGCTATGAGAAAATCTATGACATTGCTCTTGGAATAGCTCTTGGAATTCAATACCTACACCAAGGCTGTGACATGCAAATCATACACTTTGATATAAAACCTCATAACATCCTTCTTGATGAGAATTTCAACCCAAAGATATCTGACTTTGGACTGGCAAAATTGTACCGAACAGATCAAAGCACTTTATCTCTAACAGCAGCAAGAGGAACAATGGGATACATGGCTCCTGAGTTGTTGTACAAAAATATTGGAAGCATCACATACAAAGCTGATGTTTATAGTTTTGGGATGATGCTGATGGAAATGGCAGGCAGAAAAAAGAACTCAAATGTTGTGGAGAATTCTTGGCAAGACTACTTTGCTAAATGGGTTTATGACCAATTTGAGGAAACAATACATCTAAACAATGTGACAGAAGAGGAGAAGAATATAGCAATGAAGATGATTGTGATAGCCTTAAAATGCATACAAATGAAGCCAGGTGATCGTCCCTCAATGAATGAAGTGATAGAGATGCTTGAAGGAGATGATGTGCCCCAAGATGTTCTTCCTCCTGATCCTGAACCTCTCCTGACTTGGCAAAGGATGTCAGCACATGAAAATGTAATTGATGACAACTGA 1872 0.4097 MCVSCGGLIAFATLFVCSYYALVRNGFYYEYECFVPSWRPCGIIFNETFSSSSSYYEGGRCVNPRYEVICENNKPVIYFNYDTSHNIDAIIAAANSSTAFRYITTGVNPNDNCSFINLHSMPYENISFFTSSYDENLAVLRCERPVNVDGYRDISKHCGHADEEKHYYSYMLLPDDSRSDVAYIAESCSVEMKVIMRTEEAIRCGRNCSYPEIQSEYVNGIELRWQPIRWQPEKETWQPQPHCIPDGNLYAVLNNFIQIGYLLFLLVIGKFVLGSPFVVIFLIYKWRKRHLSGNDPVEDFIQSHNNFMPIRYSYSQIKRMTKSFKHKLGEGGYGSVYKGELQSKRIVAVKVLTKSQTNGQEFISEVATIGRIRHVNVVQLIGFCAERTKQALVYEFMPNGSLDKHTFSQEQGSSSLSYEKIYDIALGIALGIQYLHQGCDMQIIHFDIKPHNILLDENFNPKISDFGLAKLYRTDQSTLSLTAARGTMGYMAPELLYKNIGSITYKADVYSFGMMLMEMAGRKKNSNVVENSWQDYFAKWVYDQFEETIHLNNVTEEEKNIAMKMIVIALKCIQMKPGDRPSMNEVIEMLEGDDVPQDVLPPDPEPLLTWQRMSAHENVIDDN. 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05868 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 296 610 IPR045874 GO:0004672
Seca12g05868 623 CDD STKc_IRAK 328 592 - -
Seca12g05868 623 Pfam Protein kinase domain 325 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05868 623 FunFam PR5-like receptor kinase 397 600 - -
Seca12g05868 623 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Seca12g05868 623 Gene3D Phosphorylase Kinase; domain 1 298 396 - -
Seca12g05868 623 SMART serkin_6 322 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05868 623 FunFam serine/threonine-protein kinase PBS1-like 293 396 - -
Seca12g05868 623 SUPERFAMILY Protein kinase-like (PK-like) 298 592 IPR011009 -
Seca12g05868 623 ProSiteProfiles Protein kinase domain profile. 322 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05868 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Seca12g05868 623 Gene3D Transferase(Phosphotransferase) domain 1 397 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05868 Seca-Chr12 150409208 150413605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05868 308 621 Receptor kinase-like Gene Family AT5G38280 51.084 9.47e-102 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca12g05868 Pkinase 9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05868 - - tpra:123914142 743.036