Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05861 ATGATAAACTCTACTCTGAGGCGCAGGACCCATTTGGTGCAATCTTTCTCAGTTGTTTTCCTCTATTGGTTCTATGTTTTCTCATGTCCTGGTGGAGCATACTCATCTGGTTCCAGTTCTCTTCAAAACTCTGCCTCAGGTTCTGAGGGAGATCATGTTATGGAGCTGAGGAAGAGAAAGAGAATGCAATCCAATAGGGAATCGGCACGTAGATCTAGGATGAGGAAGCAGCAACACCTTGAGGGTCTTAGTGCTCAAGTGGATCAACTCAAGAAGGAGAACAACCAAATCACCACAAACATTGGGATCACTACTCAGATGTATCTCAAAGTGGAGTCTGAGAATGAAATTCTAAGGGTTCAAATGGCTGAACTTAGCAACAGGTTGCAATCACTTAATGAAATCATAAATTACATAAACTCAACCAACAACAACCACAACCTGTTTCAGGAGATTCATTACTTCAATGATTGTGGCTTCATGGAGGACACATGGAACTCTCCTCTCTCTATCAATCAATCAATTATGGCCTCTGCTGATATGTTGATGTATTGA 555 0.4162 MINSTLRRRTHLVQSFSVVFLYWFYVFSCPGGAYSSGSSSLQNSASGSEGDHVMELRKRKRMQSNRESARRSRMRKQQHLEGLSAQVDQLKKENNQITTNIGITTQMYLKVESENEILRVQMAELSNRLQSLNEIINYINSTNNNHNLFQEIHYFNDCGFMEDTWNSPLSINQSIMASADMLMY. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05861 184 Coils Coil 108 135 - -
Seca12g05861 184 FunFam BZIP transcription factor 55 106 - -
Seca12g05861 184 SMART brlzneu 53 117 IPR004827 GO:0003700|GO:0006355
Seca12g05861 184 Gene3D - 56 110 - -
Seca12g05861 184 MobiDBLite consensus disorder prediction 51 78 - -
Seca12g05861 184 CDD bZIP_plant_GBF1 58 108 IPR045314 GO:0003700|GO:0006355
Seca12g05861 184 PANTHER BZIP TRANSCRIPTION FACTOR 44 35 181 - -
Seca12g05861 184 SUPERFAMILY Leucine zipper domain 56 110 IPR046347 GO:0003700|GO:0006355
Seca12g05861 184 MobiDBLite consensus disorder prediction 38 78 - -
Seca12g05861 184 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 60 75 IPR004827 GO:0003700|GO:0006355
Seca12g05861 184 Coils Coil 73 100 - -
Seca12g05861 184 Pfam bZIP transcription factor 55 115 IPR004827 GO:0003700|GO:0006355
Seca12g05861 184 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 55 101 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05861 Seca-Chr12 150344547 150345270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05861 53 184 bZIP Transcription Factor Family AT4G34590 53.285 1.10e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca12g05861 bZIP_1 2.3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05861 K25786 - gmx:778139 167.933