Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05859 ATGGCAACTTTAGTGGAGCCCCCCAACAGAATTAAGCCAAAAGGGAAGCATTATTATACAATATGGCAAACATTGTTTGAGATTGATACGAAGTATGTTCCAATCAAGCCTATTGGCCGAGGAGCATATGGCGTGGTGTGCTCTTCCATCAATAGGGAGACCAATGAGAAAGTTGCAATTAAGAAGATTGGTAATATATTTGAGAATTGTATTGATGCATTGAGAACTTTAAGGGAGCTGAAGCTGCTTAGACATATTCGGCATGAGAATGTCATTGCTTTGAAAGATGTCATGATGCCAATACATAGAACAAGTTTTAAGGACGTCTACTTGGTGTATGAACTCATGGATACAGATCTTCATCAGATTATTAAGTCCTCTCAGCAACTGTCCAATGATCATTGCAAATATTTCTTGTTTCAGCTCCTTCGCGGTCTTAAATATCTTCATTCTGCAAATATTCTTCACCGGGACCTGAAGCCTGGGAATCTGCTCATCAATGCCAATTGTGATTTGAAGATATGTGACTTTGGGCTTGCACGAACCAATGGAGTTGATGGCCAGTTCATGACAGAATATGTTGTCACTCGCTGGTATCGTGCTCCAGAGCTTCTGTTATGTTGTGACAATTATGGAACCTCTATTGATGTCTGGTCTGTAGGATGCATTTTTGCTGAGATTCTTGGTAGAAAGCCAATCTTCCCTGGAACTGAGTGCCTAAACCAGCTGAAACTAATTATAAGTGTTCTTGGAAGCCAGCATGAATCTGATCTTGAGTTTATTGATAATACAAAAGCCAGGAGGTTTATCAAATCACTGCCTTATACAAGGGGCAGGCCCTTCTCTCAGCTATACCCACAAGCAGATCCATTAGCCATAGATTTGTTGCAAAGAATGCTTGTATTTGATCCAACTAAGAGAATTACTGTCTTAGAAGCACTCCAACACCCATATATGGCTGGTCTGTACGATCCAATGCGTAACCCTCCTGCTCAGGTTCCCATCAATCTTGACATAGATGAACATTGGGGAGAACAGATGATTAGGGAAATGATGTGGAATGAGATGCTTCATTATCACCCTGAAACTGCTTCTGCCAATGCATATGTGTGA 1113 0.4097 MATLVEPPNRIKPKGKHYYTIWQTLFEIDTKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKIGNIFENCIDALRTLRELKLLRHIRHENVIALKDVMMPIHRTSFKDVYLVYELMDTDLHQIIKSSQQLSNDHCKYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTNGVDGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRKPIFPGTECLNQLKLIISVLGSQHESDLEFIDNTKARRFIKSLPYTRGRPFSQLYPQADPLAIDLLQRMLVFDPTKRITVLEALQHPYMAGLYDPMRNPPAQVPINLDIDEHWGEQMIREMMWNEMLHYHPETASANAYV. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05859 370 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Seca12g05859 370 FunFam Mitogen-activated protein kinase 18 126 - -
Seca12g05859 370 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Seca12g05859 370 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca12g05859 370 CDD STKc_TEY_MAPK 26 361 - -
Seca12g05859 370 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05859 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 328 - -
Seca12g05859 370 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05859 370 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Seca12g05859 370 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05859 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Seca12g05859 370 FunFam Mitogen-activated protein kinase 116 345 - -
Seca12g05859 370 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05859 Seca-Chr12 150322012 150325731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05859 1 368 MAP Kinase Gene Family AT2G18170 85.054 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca12g05859 Pkinase 2.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05859 K20537 - gmx:100783422 726.472