Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05857 ATGACTATGGGATATCAAAGCCAAATGGCCAAAGAGGACAGACACAGAGAAAAAGTGATGATAAAGAGCAAACCCAAATTTGTTGGGGTGAGACAAAGGGCTTCAGGGAAATGGGCTGCAGAGATCAAAGACACATCAAAGAAGATTAGGATGTGGCTTGGTACCTATCAAACTGCTGAAGAAGCTGCTAGAGCTTATGATGAAGCTGCTTTCCTCCTTCGAGGCTCAAACACTCGCACCAACTTCTCTACTCATGCCATTGCTACTCCCAATTCTCCTATATCTCTCAAACTCAGAAACCTCCTTCATCGTAAAGCCATCTCAAATCAAATCCAAATTCAAAACCAATCCACTATCATAACTCCCACTTTCCAAAATTCCCCTGCTACTCCAAATGTTAGTGCCATCATGGTCATGGAAGACAATTACAATTACTCTGCTGAAGGTAAGTCTTTGTTTAGTGTTGCTCAGAATCAAGTCCCTGATAATCCTTATGAGGCAGATATGAATATGATAAGCTGCTCAATGGGTGTGACACCAAATTCATCACAGTTTGATTATTCTTGGCCATTGCCATTACCCCAACAAATGATTAATGGGTTACCATTACCAAAAGATGGTTTCAATGAAGAAAGGCAATTTTCTGCCTCAGTATATGCCATGAATGAGTGCTATATGGAGGATACATATGGGTCTAAGTATGAATATGATGCCAATTATCCTTTCTCCCACTTGTTCTGCTTCACTTGA 750 0.4067 MTMGYQSQMAKEDRHREKVMIKSKPKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAAFLLRGSNTRTNFSTHAIATPNSPISLKLRNLLHRKAISNQIQIQNQSTIITPTFQNSPATPNVSAIMVMEDNYNYSAEGKSLFSVAQNQVPDNPYEADMNMISCSMGVTPNSSQFDYSWPLPLPQQMINGLPLPKDGFNEERQFSASVYAMNECYMEDTYGSKYEYDANYPFSHLFCFT. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05857 249 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 147 - -
Seca12g05857 249 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Seca12g05857 249 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Seca12g05857 249 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Seca12g05857 249 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Seca12g05857 249 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Seca12g05857 249 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Seca12g05857 249 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Seca12g05857 249 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Seca12g05857 249 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05857 Seca-Chr12 150298202 150298951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05857 3 249 AP2-EREBP Transcription Factor Family AT5G19790 37.895 1.66e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g05857 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05857 K09286 - gmx:100809046 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05857 12 150298202 150298951 Seca12g05857 12 150298202 150298951 ECH