Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05834 ATGAGCATGGATTCGAATTCACATGGTAACCTCGATGAGCAGATTTCTCAGCTCATGCAGTGCAAGCCCTTGTCCGAGCAAGAGGTAAGGGTCTTGTGTGATAAGGCAAAGGAGATTTTGATGGAAGAGAGCAATGTCCAGCCTGTGAAAAGTCCTGTTACAATTTGTGGTGATATTCACGGGCAATTCCATGATCTTGCAGAGCTTTTTCGCATTGGAGGGAAGTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTTGATCGTGGCTATTATTCTGTCGAAACTGTAACGCTTTTGGTTGCCCTTAAAGTGCGTTATCGTCAGCGTATCACTATTCTGAGGGGAAATCATGAAAGTCGTCAGATTACTCAAGTTTATGGGTTTTATGATGAGTGCTTACGGAAGTATGGTAGTGCTAATGTTTGGAAGATGTTCACTGATTTGTTTGACTACTTTCCGTTGACAGCACTGGTTGAATCTGAAATATTTTGTCTTCATGGTGGGTTGTCCCCATCTATTGAAACCCTCGACAACATACGGAATTTTGATCGTGTACAAGAAGTTCCTCATGAGGGACCCATGTGTGATCTTCTATGGTCTGATCCGGATGATCGCTGTGGTTGGGGTATCTCTCCCAGAGGTGCTGGATATACCTTTGGCCAGGACATATCTGAGCAATTTAACCATACCAATAACTTGAAGCTGATTGCTAGAGCTCACCAGCTGGTTATGGAAGGATATAACTGGGGTCATGATCAAAAGGTGGTTACCATATTTAGTGCACCTAATTATTGTTATCGCTGTGGGAACATGGCATCTATCCTTGAAGTTGATGACTGCAAAGGACACACATTCATTCAGGTTGAGCCTCCCTTTTTGTTCCCTACCTAA 897 0.4292 MSMDSNSHGNLDEQISQLMQCKPLSEQEVRVLCDKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKMFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGYNWGHDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQVEPPFLFPT. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05834 298 PRINTS Serine/threonine phosphatase family signature 234 254 IPR006186 GO:0016787
Seca12g05834 298 PRINTS Serine/threonine phosphatase family signature 114 138 IPR006186 GO:0016787
Seca12g05834 298 PRINTS Serine/threonine phosphatase family signature 81 108 IPR006186 GO:0016787
Seca12g05834 298 PRINTS Serine/threonine phosphatase family signature 256 272 IPR006186 GO:0016787
Seca12g05834 298 PRINTS Serine/threonine phosphatase family signature 52 79 IPR006186 GO:0016787
Seca12g05834 298 PRINTS Serine/threonine phosphatase family signature 178 205 IPR006186 GO:0016787
Seca12g05834 298 PRINTS Serine/threonine phosphatase family signature 149 175 IPR006186 GO:0016787
Seca12g05834 298 SMART pp2a_7 24 294 IPR006186 GO:0016787
Seca12g05834 298 SUPERFAMILY Metallo-dependent phosphatases 8 293 IPR029052 -
Seca12g05834 298 ProSitePatterns Serine/threonine specific protein phosphatases signature. 115 120 IPR006186 GO:0016787
Seca12g05834 298 Gene3D - 2 294 IPR029052 -
Seca12g05834 298 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 9 291 IPR047129 GO:0004722
Seca12g05834 298 FunFam Serine/threonine-protein phosphatase 3 295 - -
Seca12g05834 298 CDD MPP_PP2A_PP4_PP6 10 292 - -
Seca12g05834 298 Pfam Calcineurin-like phosphoesterase 52 243 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05834 Seca-Chr12 150032745 150041437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05834 16 240 Calmodulin-binding Proteins AT5G63870 34.082 5.25e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05834 K04382 - gmx:100782279 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05834 12 150032745 150041437 Seca12g05834 12 150032745 150041437 ECH
Seca2g04134 2 124736045 124737893 Seca12g05834 12 150032745 150041437 ECH