Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05831 ATGCGAACTTCATGGGCTGACTTGGCTGCAAATTCTGCAGCTGAAAATGCAGGTCCTGGTTCTTCTGCCAACAACGCAGGAACTGGTAGCACTTTAGCTCCTTCACGACCAGTGTATGTTCCTCCCCATCTGAGGAACCGCCCACCATCAGCAGAATCCCCTGCTCCAACATATAGTGGCCCTACTTCTGGCTCTGGTACTGTTGCTGGTAATGCTGGATCACGTTGGGCTGCACCCAGAAATGATAATCGATCTGGGTATGGTGGCAGTGGCCGCCCAAGTGGATGGGGAAACAGAACTGGTGGTTGGGATCGTGGCAGAGAGCGGGAAGTCAATCCCTTTGAAGATGAGGATAATGAAGAACAGGCATTTAGTGAGCAGGAGAATACAGGAATAAATTTTGATGCATATGAAGACATTCCAGTGGAGACTAGTGGTGACAATGTGCCCCCACCTGTAAATACATTTGCAGAGATTGACTTGGGTGAGGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGGCATGCCATACCAATATCCCTTGCTGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACAGCAGCTTTTTGTTTCCCAATTATCAGTGGAATCATGAGGGGCCAACCCGTGCAGAGGCCACCTCGTGGGGTGCGTACAGTGTATCCACTTGCACTTGTTCTTTCACCAACTAGGGAGCTATCAATGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAAACTGGGGTTAGGGTGGTTGTTGCCTATGGTGGAGCACCAATAAATCAGCAGGTTTTGTCCCTTCTTTTATCTTTGCTTCTCTTTGTTCTGCTGCGGGATCTTGAGAGAGGGGTGGATATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATTCGATATCTGGCCTTAGATGAGGCTGACCGGATGCTGGATATGGGTTTTGAGCCGCAAATACGGAAGATTGTGGAAAAAATGGACATGCCTCCACCAGGTGTCAGACAGACTATGTTGTTCAGTGCCACATTCCCAAAAGAGATACAGAGATTGGCCTCTGATTTCCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAACGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGTTGTGTCTTAATGGTTTTCCTGCAACTACTATTCACGGTGACAGGTCACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTCAATTTTGACTTGCCAAATGATATCGATGATTATGTACACCGTATAGGAAGAACTGGACGAGCAGGAAAGAAAGGCCTTGCTACTGCATTCTTTAATGACAACAATGCATCTCTAGCTAGGTCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCTCGGTATGCTGCTAGATCTTCTTTTGGTGGAGGGAGGAACCGTCGATCAGGAGGTGGTCGGTTTGGTAGCCGTGACATCCGAAGAGAGGGCTCTTTTAATAGAGGTGCTTCAGAATATTACAATGCAGGAAACAGCAGTGGTGGAGGTGGATATGGGGGCTCTGGTGGGTATGCTGGAGGTTATGGTCCTGGGGTCACTAGTGCATGGGACTGA 1887 0.4695 MRTSWADLAANSAAENAGPGSSANNAGTGSTLAPSRPVYVPPHLRNRPPSAESPAPTYSGPTSGSGTVAGNAGSRWAAPRNDNRSGYGGSGRPSGWGNRTGGWDRGREREVNPFEDEDNEEQAFSEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQVLSLLLSLLLFVLLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEKMDMPPPGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLADLMQEANQEVPAWLSRYAARSSFGGGRNRRSGGGRFGSRDIRREGSFNRGASEYYNAGNSSGGGGYGGSGGYAGGYGPGVTSAWD. 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05831 628 MobiDBLite consensus disorder prediction 52 70 - -
Seca12g05831 628 SMART helicmild6 441 522 IPR001650 -
Seca12g05831 628 Gene3D - 109 385 IPR027417 -
Seca12g05831 628 Pfam DEAD/DEAH box helicase 178 372 IPR011545 GO:0003676|GO:0005524
Seca12g05831 628 Pfam Helicase conserved C-terminal domain 407 522 IPR001650 -
Seca12g05831 628 MobiDBLite consensus disorder prediction 1 32 - -
Seca12g05831 628 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 383 IPR014001 -
Seca12g05831 628 MobiDBLite consensus disorder prediction 1 130 - -
Seca12g05831 628 CDD SF2_C_DEAD 395 531 - -
Seca12g05831 628 CDD DEADc_DDX3_DDX4 155 389 IPR044763 GO:0003724|GO:0005524
Seca12g05831 628 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 122 561 - -
Seca12g05831 628 Gene3D - 386 565 IPR027417 -
Seca12g05831 628 MobiDBLite consensus disorder prediction 566 585 - -
Seca12g05831 628 FunFam Probable ATP-dependent RNA helicase DDX4 116 385 - -
Seca12g05831 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 538 IPR027417 -
Seca12g05831 628 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 154 182 IPR014014 GO:0003724
Seca12g05831 628 SMART ultradead3 173 398 IPR014001 -
Seca12g05831 628 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 561 IPR001650 -
Seca12g05831 628 FunFam ATP-dependent RNA helicase RhlB 386 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05831 Seca-Chr12 150003225 150010716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05831 152 554 Eukaryotic Initiation Factors Gene Family AT3G19760 31.188 7.65e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05831 K11594 - gmx:100795756 1050.04