Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05821 ATGCAATTTGACTCATTGAAAAAAGTTGAAGAATTTTATAAATTATTTGCGAAGACAAAAGGATTTGGGTTTCGTACCCGCTCTAGCAAAAATAATTACTGCAATTTTGTATGTATTAGGGAAGGTGAACATAAGGTGAAAAGTGGTAAAACAGAAAATAATAATGGTAGCATGGTAGAAGTTAAGAGAAAATGTTCAACCATTCGCATGGGATGTCAAGCATCACTTGTTGTGTCAAAGGATAAGAAGCGAGACATGTGGGTTATAAAATCTTTTGATAATAATCATAATCATGTCATGGCAAGTCCTAAGAGTGTATCTTATTTGAGGTGTCATAGAAAAATAACTGGTGTTGCAAAAAAACCTTGTTGA 372 0.3306 MQFDSLKKVEEFYKLFAKTKGFGFRTRSSKNNYCNFVCIREGEHKVKSGKTENNNGSMVEVKRKCSTIRMGCQASLVVSKDKKRDMWVIKSFDNNHNHVMASPKSVSYLRCHRKITGVAKKPC. 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05821 123 Pfam FAR1 DNA-binding domain 11 100 IPR004330 -
Seca12g05821 123 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05821 Seca-Chr12 149859257 149859628 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g05821 FAR1 2e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05821 - - mtr:112422107 129.028