Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05816 ATGTCAGGCGTTTCGCTCAAGTGCGGAGACTGTGGGGCTCTGTTGAGGTCCGTAGAAGAAGCCCAGGAGCATGCTGAGCTAACCTCCCACTCCAACTTCTCCGAATCCACCGAACCCGTTCTCAACCTCGTCTGCACCACTTGCTCCAAGCCCTGCCGATCCAAAACCGAGAGTGATTTGCACACGAAAAGAACCGGGCACACTGAGTTTGTTGATAAGACTTCGGAGGCAGCAAAACCAATAAGTTTAGAGGCTCCAAAGGTGGATGCAACGTCACAGGACACTTCCGGTGCAACCACTGACCAAAATGAAGAAATGGTTGTTCCAGAAGTTGACAAAAAGCTACTTGAGGAACTTGAATCAATGGGTTTTTCAACTGCACGAGCAACACGGGCACTTCATTATTCTGGTAACACTGGCCTTGAGGCTGCTGTATCTTGGATAGTAGAGCATGAGAATGACCCTGACATAGATCAGATGCCCTTGGTACCTACCAACACCAAAGTTGAGGCTCCTAAACCTTCTCTTACCCCAGGAGAGATAAAGGCCAAACAACAGGAACTAAGGGAGAGGGCTCGCAAGAAGAAAGAAGAAGATGAGAAGAGAATGGAGAGAGAAAAAGAAAAGGAGAGAATTCGAATTGGTAAGGAGTTGCTGGAAGCCAAGAGGATTGAAGAAGAGAATGAGAGAAAACGGTTGTTGGCTTTGAGAAAAGCAGAGAAAGAGGAAGAGAAAAGGGCTAGAGAGAAGATCAGGCAAAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGAAGACTTGGATTGCCTCCAGAGGAGCCTTCAGAAGCCAAACCTTCAACTGTTGTAGAGGAGAAGAAGAGTTTTCTGCCAGTTAGGCCTGCCACAAAAGCTGAGCAGATGAGAGAGTGTTTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTAAAGAGAGCATTCCAAACTCTTCTAACCTACGTGGGGAATGTTGCCAGAAATCCCAGTGAAGAAAAATTCAGGAAGATTCGTCTTAGTAACCAAACTTTTCAGGAAAGAGTTGGTGCCTTGAAAGGGGGCATTGAGTTCCTGGAAATTTGCGGCTTTGAGAAGATCGAAGGTGGTGAGTTTTTGTTTTTGCCTAGGGACAAGGTTGAGATGGCAGTCCTGAATTCAGCTGGATCTGAACTAGACTCTGCAATAAAGAATCCATTTTTTGGAGTTCTTTAG 1233 0.4647 MSGVSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEPVLNLVCTTCSKPCRSKTESDLHTKRTGHTEFVDKTSEAAKPISLEAPKVDATSQDTSGATTDQNEEMVVPEVDKKLLEELESMGFSTARATRALHYSGNTGLEAAVSWIVEHENDPDIDQMPLVPTNTKVEAPKPSLTPGEIKAKQQELRERARKKKEEDEKRMEREKEKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPPEEPSEAKPSTVVEEKKSFLPVRPATKAEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPSEEKFRKIRLSNQTFQERVGALKGGIEFLEICGFEKIEGGEFLFLPRDKVEMAVLNSAGSELDSAIKNPFFGVL. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05816 410 CDD PUB_UBA_plant 304 410 - -
Seca12g05816 410 Pfam UBA/TS-N domain 116 148 IPR015940 -
Seca12g05816 410 Coils Coil 181 213 - -
Seca12g05816 410 MobiDBLite consensus disorder prediction 254 285 - -
Seca12g05816 410 MobiDBLite consensus disorder prediction 183 210 - -
Seca12g05816 410 MobiDBLite consensus disorder prediction 168 210 - -
Seca12g05816 410 Gene3D - 112 158 - -
Seca12g05816 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Seca12g05816 410 Coils Coil 216 261 - -
Seca12g05816 410 Gene3D - 298 400 - -
Seca12g05816 410 SUPERFAMILY PUG domain-like 292 406 IPR036339 -
Seca12g05816 410 Pfam PUB domain 317 387 IPR018997 -
Seca12g05816 410 MobiDBLite consensus disorder prediction 74 102 - -
Seca12g05816 410 SUPERFAMILY UBA-like 98 165 IPR009060 GO:0005515
Seca12g05816 410 CDD UBA_PUB_plant 110 158 - -
Seca12g05816 410 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Seca12g05816 410 SMART uba_6 112 150 IPR015940 -
Seca12g05816 410 SMART PGNneu 320 383 - -
Seca12g05816 410 MobiDBLite consensus disorder prediction 254 282 - -
Seca12g05816 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Seca12g05816 410 MobiDBLite consensus disorder prediction 88 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05816 Seca-Chr12 149815318 149822982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05816 94 410 C2H2 Transcription Factor Family AT1G04850 78.125 1.95e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05816 K24348 - gmx:100794687 652.514