Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05796 ATGCGTTGTTATGGCTTAACCATCCCTGGAACTGGAACCGATCATCGCTTCTGGGTTCCCACAGTAACTCCGGTATCACTCAGGCCCACCACCAGGCCCATGACCCGAATAACCATCGGGTTAGGGTTTCCCAAGGCGAAGGCCACTCTCAACGACGGTTTCGTGGCCGAGGAAGCTTCATCGGAACTGAGCTTCTACCAGCTTCTGGGCATACCCGAATCAGGTTCCTTGATGGATATCAAACAAGCTTACAAGCAACTCGCCCGAAAGTACCACCCGGATGTTTCTCCACCGGGTCGGGTCGACGAGTACACGAAGAGGTTCATTCAGGTTCAAGAGGCTTATGAAACCTTATCTGATCCCTCCAGAAGAGCCATGTATGATAGAGACATGGCTAGGGGCATTCACTTCGCCTTCAACGCTCGTAGACGCGACCAATACCATGATCAGGTGGTTGAACAAAAAAGTGAATGGAAATCTCGTTGGCAATCTCAACTGTCTGAGCTGAAGAGAAGAAGTAAAAGCAAGGAAGCTGGAGGGAACATGTCATGGGCAGCTCGAATGCGCCAGAAGAGAGATGAACTATGA 588 0.5068 MRCYGLTIPGTGTDHRFWVPTVTPVSLRPTTRPMTRITIGLGFPKAKATLNDGFVAEEASSELSFYQLLGIPESGSLMDIKQAYKQLARKYHPDVSPPGRVDEYTKRFIQVQEAYETLSDPSRRAMYDRDMARGIHFAFNARRRDQYHDQVVEQKSEWKSRWQSQLSELKRRSKSKEAGGNMSWAARMRQKRDEL. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05796 195 ProSiteProfiles dnaJ domain profile. 64 131 IPR001623 -
Seca12g05796 195 Pfam DnaJ domain 65 128 IPR001623 -
Seca12g05796 195 FunFam Chaperone protein dnaJ 20, chloroplastic 48 160 - -
Seca12g05796 195 CDD DnaJ 65 120 IPR001623 -
Seca12g05796 195 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 56 194 - -
Seca12g05796 195 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Seca12g05796 195 MobiDBLite consensus disorder prediction 168 195 - -
Seca12g05796 195 SMART dnaj_3 63 123 IPR001623 -
Seca12g05796 195 SUPERFAMILY Chaperone J-domain 61 141 IPR036869 -
Seca12g05796 195 Gene3D DnaJ domain 51 169 IPR036869 -
Seca12g05796 195 PRINTS DnaJ domain signature 103 123 IPR001623 -
Seca12g05796 195 PRINTS DnaJ domain signature 84 99 IPR001623 -
Seca12g05796 195 PRINTS DnaJ domain signature 66 84 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05796 Seca-Chr12 149632232 149634969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05796 66 128 C2H2 Transcription Factor Family AT1G74250 40.909 3.78e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05796 - - gmx:100101903 278.1